PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA47967.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 312aa MW: 35877.8 Da PI: 6.0535

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA47967.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	56	80	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F ++s LkrH H PKA47967.1 56 YVCHfeGCGKKFLDSSKLKRHFLIH 80 9********************8877 PP
2	zf-C2H2	22.4	3.2e-07	86	110	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y Cp Cgk Fs nL+ H+rtH PKA47967.1 86 YICPyeGCGKAFSLDFNLRAHMRTH 110 89**********************9 PP
3	zf-C2H2	16.7	2.1e-05	116	140	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp dCgk++++ Lk+Hi+ H PKA47967.1 116 HVCPyeDCGKRYTHEFKLKTHIKAH 140 79*********************96 PP
4	zf-C2H2	12.4	0.00047	175	200	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y C+ C+k + + + L+ H+r+ H PKA47967.1 175 YACTyeGCSKAYIHEYKLNLHLRKeH 200 889999******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MLNALEQKKI EMEEQEVEPE PTTEVLFLCS YEGCGKIFVD VGALKKHAHI HGERQYVCHF 60 EGCGKKFLDS SKLKRHFLIH TGEKDYICPY EGCGKAFSLD FNLRAHMRTH SVENYHVCPY 120 EDCGKRYTHE FKLKTHIKAH HEKDTIKHVS AANKQHSTPK ASPAAYGSAS SDRPYACTYE 180 GCSKAYIHEY KLNLHLRKEH PGHISEENGK QVPSIDHVMD EASDQDVYLK KDSKGKNSKR 240 SKPASLQHMP PLKSVNRKVL SDVILRNPNN TKKPWPVKET YEEDSEETEE DREQSENDDD 300 DDDDDEETED ED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	1e-100	C2H2 family protein