PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA47990.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family ARF
Protein Properties Length: 548aa    MW: 59497.5 Da    PI: 8.0323
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA47990.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.31.6e-24125226199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f kvltpsd+++ g +++p+ +a+++         ++ +   +++ d +g+sWe+++iyr++++r++lt+GW++Fv++++L +gD+vvF+  ++ +++ 
  PKA47990.1 125 FSKVLTPSDANNGGGFSVPRFCADSIfpkldftADPPVQ--NISVIDVHGNSWEFRHIYRGTPRRHLLTTGWSKFVNSKKLVAGDSVVFM--RNLTGQI 219
                 88*********************999*****98666666..69999********************************************..5677788 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  PKA47990.1 220 FLGIRRT 226
                 9999987 PP
2Auxin_resp78.41.8e-26271354183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+++a+ + +Fev+Y+P+ +++eFvv  e v +a++v++  GmR+kma+eted+s++++ +Gtv+   + ++ rW  S+Wr+L+
  PKA47990.1 271 AVRDAELGRPFEVLYYPKIGWPEFVVAKEMVDAAMTVPWGSGMRIKMAVETEDFSRTTWfQGTVAFAANPENDRWALSPWRMLQ 354
                 567888999*************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    
MPSTLTPKLM ASSRSLRQLD AGVWKACAGG STRLPKVGSL VYYFPEGHRE HGSSLPDFSS  60
ILRSSSFFLC RVNSVFLSAH SSSDEVYAKI SLDPRVPNAP AVPASSPPSL DLEEVATEGS  120
GIISFSKVLT PSDANNGGGF SVPRFCADSI FPKLDFTADP PVQNISVIDV HGNSWEFRHI  180
YRGTPRRHLL TTGWSKFVNS KKLVAGDSVV FMRNLTGQIF LGIRRTSRTS GGAINFPTLP  240
EFKLKPEEGV SGEGFSRSNR GKVSSESIVE AVRDAELGRP FEVLYYPKIG WPEFVVAKEM  300
VDAAMTVPWG SGMRIKMAVE TEDFSRTTWF QGTVAFAANP ENDRWALSPW RMLQVNWDEP  360
EVLQNLKTVN PWQVQVLSPN QPYPVAKKPR LLDGVDLPIE GHGGAESSTG CGSAEMGFLS  420
PSLCNLIGSP FGRQGARHFT LSNFVPTSTN QVFSNIISGI DIKNPHISIS EIKTPPNEGS  480
VEHCGAGIFS SGACNGKRSA KGTIQLFGQI IQIEPMTESK VTNDFSAAFS HKQLLGSHLR  540
LSVVGACE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-126ARF family protein