PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA48020.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MIKC_MADS

Protein Properties

Length: 232aa MW: 26844.1 Da PI: 9.4235

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA48020.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100	9.2e-32	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+i+fss+gklye+ PKA48020.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEFG 58 79**********************************************95 PP
2	K-box	81.3	2.2e-27	75	143	1	69
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 y+++ ++++ ++++++++qe++kLk++ e+Lqr++RhllGedL++Ls+keLqqLe+qLe++l++ R++K PKA48020.1 75 YNSQATNNVVARDTQNWYQEVTKLKAKFESLQRSHRHLLGEDLGPLSVKELQQLERQLESALSQARQRK 143 5666677799999*******************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIVFSS RGKLYEFGSA 60 GSTSKTLERY QSCCYNSQAT NNVVARDTQN WYQEVTKLKA KFESLQRSHR HLLGEDLGPL 120 SVKELQQLER QLESALSQAR QRKVVAKFVL FLIQINCLNL VIIIWSTLIL KEVNDITYLA 180 FNYLICMYQI AYSSSFISPS PYGLLDLLPF QCYNFHVFEG KIIDCNRTSF YY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	3e-69	MIKC_MADS family protein