PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA48143.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB_related

Protein Properties

Length: 634aa MW: 72624.3 Da PI: 6.9625

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA48143.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.5e-08	578	621	4	45
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++ + l++a k ++++ +W+++++ ++ g+t +qc+ ++ PKA48143.1 578 WSATQERALIQALKTFPKEtsqRWERVSAAVP-GKTVNQCRKKFA 621 ******************************.******9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence
MDCKNIMLIT YPEELNDGEP VYVSSNCHPV KALKFEPAGH SFHAAALKLL GYDDDEDDTD 60 ADDESVLSDE RNQSYMPSSD YSGKGKKKSS AGTMQQDHYA LLGLGHLRFL ATEEQIRKSY 120 RETALKYHPD KQAALLLAEE SEAARQAKKD EIESHFKSIQ EAYEVLIDPV KRRMYDSTDE 180 FDDEIPTECA AKDFFKVFGP AFLRNARWSV NQPVPALGED NTQMEDVDEF YNFWYSFKSW 240 REFPHADEFD LEQAESRDHK RWMERQNAKL REGARKEEYI RVRSLVDNAY KKDPRILRRK 300 EEEKAEKQRR KEAKHLARRM QEEEAARVAE AEKRQREEEE KKAAEAASYL KKQKEKDKKL 360 LRKERNRFRT ISSPIVSRSL LGLSQDDVES LCSSLEMEQL RNLCDGIEHR EEAERAHAIK 420 NAVKQEKTDT VKSEVKKQRP NDSQGSGPAA NGASLLGSSE NKETPWEKEE IEMLRKSMQK 480 YPKGTSRRWE VIAEYIGTGR SVEEILKATK TVLLQKPDSA KAFDSFLEKR KPAPSISSPL 540 TTRLESEGLL ANGSKTNESS AIDGGKQNGA SSIANDIWSA TQERALIQAL KTFPKETSQR 600 WERVSAAVPG KTVNQCRKKF ALLRENFRSK KITD

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence

MDCKNIMLIT YPEELNDGEP VYVSSNCHPV KALKFEPAGH SFHAAALKLL GYDDDEDDTD  60
ADDESVLSDE RNQSYMPSSD YSGKGKKKSS AGTMQQDHYA LLGLGHLRFL ATEEQIRKSY  120
RETALKYHPD KQAALLLAEE SEAARQAKKD EIESHFKSIQ EAYEVLIDPV KRRMYDSTDE  180
FDDEIPTECA AKDFFKVFGP AFLRNARWSV NQPVPALGED NTQMEDVDEF YNFWYSFKSW  240
REFPHADEFD LEQAESRDHK RWMERQNAKL REGARKEEYI RVRSLVDNAY KKDPRILRRK  300
EEEKAEKQRR KEAKHLARRM QEEEAARVAE AEKRQREEEE KKAAEAASYL KKQKEKDKKL  360
LRKERNRFRT ISSPIVSRSL LGLSQDDVES LCSSLEMEQL RNLCDGIEHR EEAERAHAIK  420
NAVKQEKTDT VKSEVKKQRP NDSQGSGPAA NGASLLGSSE NKETPWEKEE IEMLRKSMQK  480
YPKGTSRRWE VIAEYIGTGR SVEEILKATK TVLLQKPDSA KAFDSFLEKR KPAPSISSPL  540
TTRLESEGLL ANGSKTNESS AIDGGKQNGA SSIANDIWSA TQERALIQAL KTFPKETSQR  600
WERVSAAVPG KTVNQCRKKF ALLRENFRSK KITD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06110.1	0.0	MYB family protein