PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA48164.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

SBP

Protein Properties

Length: 1103aa MW: 123000 Da PI: 7.9936

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA48164.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	120.2	1e-37	172	248	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C vegC adls++k+yh+rhkvCe+h+ka++++v ++ qrfCqqCsrfh+l+efDeekrsCrrrLa+hn+rrrk+++ PKA48164.1 172 CLVEGCCADLSHCKDYHKRHKVCEMHAKASSAVVGNVIQRFCQQCSRFHHLQEFDEEKRSCRRRLAGHNRRRRKTHS 248 **************************************************************************875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1103 aa Download sequence
MWISVGWIHS GVMPLDFWGL SEQIRMEATN IGEAKHQSFA AGTSGSHGKN AHEWDLNEWE 60 WNGDLFVATP VKKGPLDCRN KQLFSDPALS NSSSSYSGET EFGITGIGQG AVGKRRRIMI 120 VEDDEQSDEA GSLTLKLGGH SYPVLGDVTA IGGTKNGIMI KVQGSKPNQP KCLVEGCCAD 180 LSHCKDYHKR HKVCEMHAKA SSAVVGNVIQ RFCQQCSRFH HLQEFDEEKR SCRRRLAGHN 240 RRRRKTHSEA TSSGTYMSRD QSTSYLLISF LRILANLMSD KSEQSKDHEF LSNLLRNIAC 300 LAGSAGGNSS PSIIQASQDL QKVWRSFETS NDLLDGVPMK ENIKPSHARA IASCHPLVAT 360 IDFASGSITS IERNCQKNIT THSLVETGQV LPSQSLVSQE NDLSRISNAP GSSQHMLPLA 420 SKHVGQIIKG FDLNIECNED QNGYRGFDHT AHNTFMSSKS NCFPWKQHDS LHSSPLQTSG 480 NSDSASPQSP SSSNCDAQSR TDRLVFKLFG KDPNDFPLAL RAQILDWLSH SPTDIESYIR 540 PGCIILSVYL RLDGSAWEKL CCDLGSSLKA LLCLCTDDFW RTGWIYARVQ QHIAFIYKGE 600 VVFDKSLMTD RFSFCKIYSV APIAVSPSSM VTFKVKGSNL LQSSARLLCA FEGRYLTQGI 660 IQSSVERLGD TRRCRKLQYL SISCSLPKAT GRGFIEVEDS GLSGGFFPFI VAEEDICAEV 720 RSLESSIDVE SFDDLSREKF EAKRNVILNF LHEMGWLLRR SQLRSRLESM YCFSEGFSLV 780 RFRWLLKFGI DSNWCAVVKK LLDILFEGNI ELGGRSPFEV ALSENLLHRA VQKNSKSTVK 840 LLLRYKSEND SDRNIENFIF RPDMPGPSTI TPLHVVANCG CADSMLDILT DDPGRCGLKA 900 WSSARDITGF TPNDYARARG HKSYIMLVEN KIKNKIYGKH DVFLNIPREL SLASYATNGK 960 LGEHKSCKQN NRGMENSSSI LSEPSECRLC YRQSVYRSAA ETSLPHRPML RSMVGIAAVC 1020 VCVGLLFKGP PKVLFVCPPF SWERLQYGYI GDGDKTVASE SRMYQKGNDN MAKGHVNSTG 1080 FLWQMLLNDP MDELTVKIDE KIF

Sequence ? help Back to Top

Protein Sequence Length: 1103 aa Download sequence

MWISVGWIHS GVMPLDFWGL SEQIRMEATN IGEAKHQSFA AGTSGSHGKN AHEWDLNEWE  60
WNGDLFVATP VKKGPLDCRN KQLFSDPALS NSSSSYSGET EFGITGIGQG AVGKRRRIMI  120
VEDDEQSDEA GSLTLKLGGH SYPVLGDVTA IGGTKNGIMI KVQGSKPNQP KCLVEGCCAD  180
LSHCKDYHKR HKVCEMHAKA SSAVVGNVIQ RFCQQCSRFH HLQEFDEEKR SCRRRLAGHN  240
RRRRKTHSEA TSSGTYMSRD QSTSYLLISF LRILANLMSD KSEQSKDHEF LSNLLRNIAC  300
LAGSAGGNSS PSIIQASQDL QKVWRSFETS NDLLDGVPMK ENIKPSHARA IASCHPLVAT  360
IDFASGSITS IERNCQKNIT THSLVETGQV LPSQSLVSQE NDLSRISNAP GSSQHMLPLA  420
SKHVGQIIKG FDLNIECNED QNGYRGFDHT AHNTFMSSKS NCFPWKQHDS LHSSPLQTSG  480
NSDSASPQSP SSSNCDAQSR TDRLVFKLFG KDPNDFPLAL RAQILDWLSH SPTDIESYIR  540
PGCIILSVYL RLDGSAWEKL CCDLGSSLKA LLCLCTDDFW RTGWIYARVQ QHIAFIYKGE  600
VVFDKSLMTD RFSFCKIYSV APIAVSPSSM VTFKVKGSNL LQSSARLLCA FEGRYLTQGI  660
IQSSVERLGD TRRCRKLQYL SISCSLPKAT GRGFIEVEDS GLSGGFFPFI VAEEDICAEV  720
RSLESSIDVE SFDDLSREKF EAKRNVILNF LHEMGWLLRR SQLRSRLESM YCFSEGFSLV  780
RFRWLLKFGI DSNWCAVVKK LLDILFEGNI ELGGRSPFEV ALSENLLHRA VQKNSKSTVK  840
LLLRYKSEND SDRNIENFIF RPDMPGPSTI TPLHVVANCG CADSMLDILT DDPGRCGLKA  900
WSSARDITGF TPNDYARARG HKSYIMLVEN KIKNKIYGKH DVFLNIPREL SLASYATNGK  960
LGEHKSCKQN NRGMENSSSI LSEPSECRLC YRQSVYRSAA ETSLPHRPML RSMVGIAAVC  1020
VCVGLLFKGP PKVLFVCPPF SWERLQYGYI GDGDKTVASE SRMYQKGNDN MAKGHVNSTG  1080
FLWQMLLNDP MDELTVKIDE KIF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	118	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	SBP family protein