PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA48271.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 418aa MW: 43591 Da PI: 6.1799

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA48271.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.6e-12	228	273	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq PKA48271.1 228 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 273 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MKANASEMRA MQPPLNGEPD SASQVSLHEI QNGSAHPQNE NPRSLQIPAS HFAPSAGSND 60 DFFDQMLSSI PSWPDLPKSP WLLSNPAAAA GKPAGEGLQF SPPYDESSIL ASRLRDYQIS 120 SGASDRSPIS EQLPRQILNP LPLSLGGSDS GATFKPSNSI GAEEYYNGSF SAGALHRPAS 180 QLQHFAPPQH GASIPQQGIG GAPSPAAAAA EPPKQRVRAR RGQATDPHSI AERLRRERIA 240 ERMKALQELV PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV APLVADMSEA 300 AAGTEMRVSP ANESMKAAEQ QVARLMEEDM GSAMQYLQGK GLCLMPISLA SAISTATFRG 360 GTNSAAAAGL LAAGGGVIPA TDLPSSPSMS VLTVQSAVAS GAGDVDISRK DAASVSKP

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MKANASEMRA MQPPLNGEPD SASQVSLHEI QNGSAHPQNE NPRSLQIPAS HFAPSAGSND  60
DFFDQMLSSI PSWPDLPKSP WLLSNPAAAA GKPAGEGLQF SPPYDESSIL ASRLRDYQIS  120
SGASDRSPIS EQLPRQILNP LPLSLGGSDS GATFKPSNSI GAEEYYNGSF SAGALHRPAS  180
QLQHFAPPQH GASIPQQGIG GAPSPAAAAA EPPKQRVRAR RGQATDPHSI AERLRRERIA  240
ERMKALQELV PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV APLVADMSEA  300
AAGTEMRVSP ANESMKAAEQ QVARLMEEDM GSAMQYLQGK GLCLMPISLA SAISTATFRG  360
GTNSAAAAGL LAAGGGVIPA TDLPSSPSMS VLTVQSAVAS GAGDVDISRK DAASVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	233	238	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	4e-58	bHLH family protein