PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA48429.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family YABBY
Protein Properties Length: 219aa    MW: 24639.1 Da    PI: 8.6199
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA48429.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY212.71.2e-65191886170
       YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas..qllaae..shldeslkee..lleelkveeenlksnvekeesastsvss 98 
                  seq+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhCt+llsvn++       l+    +hl+     +  + +el ++  +l+  +   ++ s++ + 
  PKA48429.1  19 PSEQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLshPFLSPLphNHLSLFRLATfpQDQELSHSPPSLTPDQAIPNTDSAKGTD 117
                 68******************************************9987633233333013333333333334444444444554444444444444333 PP

       YABBY  99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  + +  ++  v r   v   PekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+i fgl
  PKA48429.1 118 -HEELPHHPVVNRREFVGAAPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIQFGL 188
                 .2244555566666667789**************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MSSSSSAAFS HLDHLSPPPS EQLCYVHCNF CDTVLAVSVP CSSLFKTVTV RCGHCTNLLS  60
VNMRGLLSHP FLSPLPHNHL SLFRLATFPQ DQELSHSPPS LTPDQAIPNT DSAKGTDHEE  120
LPHHPVVNRR EFVGAAPEKR QRVPSAYNRF IKDEIQRIKA GNPDITHREA FSAAAKNWAH  180
FPHIQFGLMP DQSIKKTIRQ QVIKLDEKKK ELFYIKSLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-59YABBY family protein