PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA48696.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 533aa MW: 58829.8 Da PI: 6.6884

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA48696.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.6e-18	30	77	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lv++vk++G g+W+++ ++ g+ R++k+c++rw ++l PKA48696.1 30 KGPWTLAEDAILVEYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 77 79******************************************9986 PP
2	Myb_DNA-binding	51	3.4e-16	83	126	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE++l++++++++G++ W++ a ++ gRt++++k++w++ PKA48696.1 83 KGAFTQEEEQLIAELHAKMGNK-WARMATLLP-GRTDNEIKNYWNT 126 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MLRKDQPGSS SNDESSCGGS PAAGSLILKK GPWTLAEDAI LVEYVKKHGE GNWNAVQKHS 60 GLSRCGKSCR LRWANHLRPN LKKGAFTQEE EQLIAELHAK MGNKWARMAT LLPGRTDNEI 120 KNYWNTRIKR RQRAGLPLYP TNLCLQTSKE NQLIQNNSEV KDANKQNGEI LMGSMYEMAE 180 FEFHSFKSNP WLLSYSLPLR GTPSSGMQCS AIGSQTRSFD KPAVNCIMQS SEFQCHGSPA 240 NMISICEQVP INPSEMINQR LGLGYTFNPE NHNKNPMSFG RSILGSHALS NGTFSASRHP 300 PGPVKMELPS LQYQETDYSS WLTDPDSPYE AVDTYIQSPL TYFSVQSHCT SPRSSGLLEA 360 LVHESRALSS MQKQSSEKSS SSSALTPSDM LESSTVNFCS GDWEETSGPS SPFYRSASLI 420 NECSFDELPP CTVPSASVSA GTKITRAEQV SSPNKSAKDA SHRPDFFRPD ALLGSNWFFA 480 TSQNLKTSIM NDAIASLLAE EDGCKPCATS SMISFDSYPW NNMPQAYQMP EHD

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MLRKDQPGSS SNDESSCGGS PAAGSLILKK GPWTLAEDAI LVEYVKKHGE GNWNAVQKHS  60
GLSRCGKSCR LRWANHLRPN LKKGAFTQEE EQLIAELHAK MGNKWARMAT LLPGRTDNEI  120
KNYWNTRIKR RQRAGLPLYP TNLCLQTSKE NQLIQNNSEV KDANKQNGEI LMGSMYEMAE  180
FEFHSFKSNP WLLSYSLPLR GTPSSGMQCS AIGSQTRSFD KPAVNCIMQS SEFQCHGSPA  240
NMISICEQVP INPSEMINQR LGLGYTFNPE NHNKNPMSFG RSILGSHALS NGTFSASRHP  300
PGPVKMELPS LQYQETDYSS WLTDPDSPYE AVDTYIQSPL TYFSVQSHCT SPRSSGLLEA  360
LVHESRALSS MQKQSSEKSS SSSALTPSDM LESSTVNFCS GDWEETSGPS SPFYRSASLI  420
NECSFDELPP CTVPSASVSA GTKITRAEQV SSPNKSAKDA SHRPDFFRPD ALLGSNWFFA  480
TSQNLKTSIM NDAIASLLAE EDGCKPCATS SMISFDSYPW NNMPQAYQMP EHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11440.1	5e-86	MYB family protein