PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA48808.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HSF

Protein Properties

Length: 416aa MW: 46806.6 Da PI: 4.8134

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA48808.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.1	3.3e-34	41	131	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++++++d+ ++ +isws+++nsfvv+++++fa ++Lpk+FkhsnfaSFvRQLn+YgF+k++ ++ weF+hk F +g+k+ll++ik PKA48808.1 41 FLTKTFDLVDDPCTNLVISWSKTNNSFVVWEPHSFAVDMLPKHFKHSNFASFVRQLNTYGFRKIDPDR---------WEFAHKGFLRGQKHLLKTIK 128 9**************************************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r++ PKA48808.1 129 RRR 131 *97 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MESHVLDVVK QECSEASSCS PVDVGLPQPM GGLHDAGPPP FLTKTFDLVD DPCTNLVISW 60 SKTNNSFVVW EPHSFAVDML PKHFKHSNFA SFVRQLNTYG FRKIDPDRWE FAHKGFLRGQ 120 KHLLKTIKRR RPPTHPLHQP QGSEACLEDG RFGIDGEIVR LNCDKDVLME EVIKLRQDQQ 180 KTRSYIEAME KRLCGAEQKH HQMMAFLAKA VQNPNFLQQL SEQQERRKEL EEAISKKRRL 240 SIGSVPANVD ATPIQLNQKP KSVFDVEGEI PELEGVALGF QGLDDSVPEE AISKKQRLSI 300 DSVPANVDAI QSQLNQNHQG EIPEFAGVAS GFQGLDDSAP ENVNACGSQL NQKAEFVFDV 360 EDEDLPAQEI PELESLAFVF QGLDHSADIY NEKKQQVVEE SVLTDEYWQK LLNEGI

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MESHVLDVVK QECSEASSCS PVDVGLPQPM GGLHDAGPPP FLTKTFDLVD DPCTNLVISW  60
SKTNNSFVVW EPHSFAVDML PKHFKHSNFA SFVRQLNTYG FRKIDPDRWE FAHKGFLRGQ  120
KHLLKTIKRR RPPTHPLHQP QGSEACLEDG RFGIDGEIVR LNCDKDVLME EVIKLRQDQQ  180
KTRSYIEAME KRLCGAEQKH HQMMAFLAKA VQNPNFLQQL SEQQERRKEL EEAISKKRRL  240
SIGSVPANVD ATPIQLNQKP KSVFDVEGEI PELEGVALGF QGLDDSVPEE AISKKQRLSI  300
DSVPANVDAI QSQLNQNHQG EIPEFAGVAS GFQGLDDSAP ENVNACGSQL NQKAEFVFDV  360
EDEDLPAQEI PELESLAFVF QGLDHSADIY NEKKQQVVEE SVLTDEYWQK LLNEGI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	130	LKTIKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-100	HSF family protein