PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA48809.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 377aa MW: 41428.6 Da PI: 9.6113

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA48809.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.2	3.3e-06	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H PKA48809.1 84 FVCEICGKGFQRDQNLQLHRRGH 106 89*******************88 PP
2	zf-C2H2	12.6	0.00043	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + s+ k H +t+ PKA48809.1 164 WKCDKCSKKYAVLSDWKAHVKTC 186 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MFPSPLAISN SSEEASINSF ETRVAHQDFI NGGLPVSPQT QPRPPLSSSQ KKKKKKKRSQ 60 PGNPDPEAEV VALSPGSLQA TNRFVCEICG KGFQRDQNLQ LHRRGHNLPW RLRQRGAGKE 120 AAAARKKVYV CPEPTCVHHH PSRALGDLTG IKKHFSRKHG EKKWKCDKCS KKYAVLSDWK 180 AHVKTCGTRE YRCDCGTLFS RKDSFVTHRA FCDALAEESA RLMASSSTST FDPSSSSNPN 240 LSLQYPNLRI PHFHVKLPQD PFQPFFNPYL PRQQPHSSAA SATALLQQAS SMGHFPAAVD 300 QSAGAFFGGL TEYQCCDRST TRDFLGAVAG EELLPLPGLG GLDPVTGPPR NNDDRSGDQT 360 RNHVGFEFPP VSGAWGP

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MFPSPLAISN SSEEASINSF ETRVAHQDFI NGGLPVSPQT QPRPPLSSSQ KKKKKKKRSQ  60
PGNPDPEAEV VALSPGSLQA TNRFVCEICG KGFQRDQNLQ LHRRGHNLPW RLRQRGAGKE  120
AAAARKKVYV CPEPTCVHHH PSRALGDLTG IKKHFSRKHG EKKWKCDKCS KKYAVLSDWK  180
AHVKTCGTRE YRCDCGTLFS RKDSFVTHRA FCDALAEESA RLMASSSTST FDPSSSSNPN  240
LSLQYPNLRI PHFHVKLPQD PFQPFFNPYL PRQQPHSSAA SATALLQQAS SMGHFPAAVD  300
QSAGAFFGGL TEYQCCDRST TRDFLGAVAG EELLPLPGLG GLDPVTGPPR NNDDRSGDQT  360
RNHVGFEFPP VSGAWGP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	51	57	KKKKKKK
2	52	58	KKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	5e-84	C2H2 family protein