PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA48921.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 281aa MW: 31862.7 Da PI: 5.0579

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA48921.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.1	9.6e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+lv+++k +G g+W++ +++ g+ R++k+c++rw +yl PKA48921.1 14 RGRWTAEEDEKLVRYIKAHGEGSWRSLPKKAGLLRCGKSCRLRWINYL 61 8*****************************99**********97 PP
2	Myb_DNA-binding	49.9	7.5e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE+e ++++ + lG++ W+ Ia +++ gRt++++k++w+++l PKA48921.1 67 RGNISEEEEETIIKLRATLGNR-WSVIAGHLP-GRTDNEIKNYWNSHL 112 7899****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence
MGRAPCCEKV GLKRGRWTAE EDEKLVRYIK AHGEGSWRSL PKKAGLLRCG KSCRLRWINY 60 LREDLKRGNI SEEEEETIIK LRATLGNRWS VIAGHLPGRT DNEIKNYWNS HLSKKTENSG 120 NHKDELKKAR KAAASSKRKV GRPSKSARKK KILEEDSSEM FRDKEGAEGV VVGRIEERES 180 GICMSSTSEE KEGGAPTLEE EVTRVELVND EGVPSLDEIE KLVDWELEDM ASRLWEEGEG 240 GWPWLMGDGG EEFGGFMEDN GELGFFKDDS WDSWILSDQV V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	151	KRKVGRPSKSARKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	2e-67	MYB family protein