PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA49161.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family MYB
Protein Properties Length: 296aa    MW: 33606.6 Da    PI: 6.2421
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA49161.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W+++++  g+ R+ k+c++rw +yl
       PKA49161.1 14 KGPWTPEEDNILVSYIQEHGPGNWRLVPANTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding48.42.2e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+ E+ +++++ ++lG++ W++Ia+ ++  Rt++++k++w+++l
       PKA49161.1  67 RGNFTPHEERIIIHLQALLGNR-WAAIASFLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MGRPPCCNKL GIKKGPWTPE EDNILVSYIQ EHGPGNWRLV PANTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TPHEERIIIH LQALLGNRWA AIASFLPQRT DNDIKNYWNT HLKKKIKTYQ  120
VAIESSMGFS DAGGAFSHDE IQRSFGDEAI KAAHNLISQS STTYASSAEN ISKLLEGWMS  180
SSPKSTLNPV HARQENSRQD AKESFIVNIN DDFAENLRGN QMKIEQESFA QIHPAEWSSQ  240
QLSFENPVIE WDKSSVNSLF DENKHDTCNY PEQQVATESL LDKWLLDEGT EQLDAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.13e-91MYB family protein