PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA49163.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family NF-YC
Protein Properties Length: 175aa    MW: 19736.3 Da    PI: 6.1477
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA49163.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1711.3e-53481502101
       NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                 l++fw++q   ie++tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+k+diaaa+trtd+fdflvdivp
  PKA49163.1  48 LQMFWADQyreIEQTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKNDIAAAITRTDVFDFLVDIVP 146
                 89****99999**************************************************************************************** PP

       NF-YC  98 rdel 101
                 r+e 
  PKA49163.1 147 REEG 150
                 *985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MDQHGHGTPP AIGVAAPVPY PAATAAPASY QAAYGHLYQQ QQQQQQHLQM FWADQYREIE  60
QTTDFKNHNL PLARIKKIMK ADEDVRMIAA EAPVVFARAC EMFILELTHR GWAHAEENKR  120
RTLQKNDIAA AITRTDVFDF LVDIVPREEG KEDAVPRALP GPGGPVDPLY YYVQQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.13e-64NF-YC family protein