PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA49439.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

CO-like

Protein Properties

Length: 346aa MW: 36307.7 Da PI: 6.6572

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA49439.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.7	3.8e-06	17	59	4	39
zf-B_box 4 rkCpeHee.kelqlfCedCqqllCedClleeHkg.......Htv 39 r+C+ ++ +++ l+C+ ++ +lC C H g H++ PKA49439.1 17 RTCDGCKGaEPAVLHCRADGAFLCGPCDARVH-GanklasrHER 59 79***8688***************9999.44667777765 PP
2	zf-B_box	22.4	2.6e-07	60	101	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37 + C+ +e+ ++ C+ + lC++C H+ H PKA49439.1 60 VWLCEVCEQAPAAVTCKADAAALCATCDADVHSAnplasrhH 101 689**************************9996577777744 PP
3	CCT	69.2	1.1e-23	270	312	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k+ PKA49439.1 270 REARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKR 312 9****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGIHGIGRGT YWRLGARTCD GCKGAEPAVL HCRADGAFLC GPCDARVHGA NKLASRHERV 60 WLCEVCEQAP AAVTCKADAA ALCATCDADV HSANPLASRH HRFPVVPFLD SPAPSANHKA 120 EALFLDGEEV SDNDTADAAA AAVWLLPEPA KDAAPEIFLK SGDCFFTEVT PYLDLDYASS 180 MDAATQHADS VVPAVAICGT APATGVGLEF GRSEPPCGGY ALSHSVSSSE VGVVPDSGGG 240 SIGGISSSSL TSAAAAAAAA AAAEAGRTYR EARVMRYREK RKNRRFEKTI RYASRKAYAE 300 TRPRIKGRFA KRTVVEAEVE RMYSSAESTT AAFIAADSSY GVVPSF

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGIHGIGRGT YWRLGARTCD GCKGAEPAVL HCRADGAFLC GPCDARVHGA NKLASRHERV  60
WLCEVCEQAP AAVTCKADAA ALCATCDADV HSANPLASRH HRFPVVPFLD SPAPSANHKA  120
EALFLDGEEV SDNDTADAAA AAVWLLPEPA KDAAPEIFLK SGDCFFTEVT PYLDLDYASS  180
MDAATQHADS VVPAVAICGT APATGVGLEF GRSEPPCGGY ALSHSVSSSE VGVVPDSGGG  240
SIGGISSSSL TSAAAAAAAA AAAEAGRTYR EARVMRYREK RKNRRFEKTI RYASRKAYAE  300
TRPRIKGRFA KRTVVEAEVE RMYSSAESTT AAFIAADSSY GVVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	2e-53	CO-like family protein