PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA49500.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HD-ZIP

Protein Properties

Length: 257aa MW: 28917.9 Da PI: 4.6867

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA49500.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.6	1.2e-19	41	94	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++++ e++ ++A+ lgL+ rqV vWFqNrRa++k PKA49500.1 41 KKRRLSVEQVRALEKNFEVENKLDPERKIRIAHDLGLQPRQVAVWFQNRRARWK 94 56689************************************************9 PP
2	HD-ZIP_I/II	130.4	7.2e-42	40	132	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls eqv++LE++Fe e+kL+perK ++a++LglqprqvavWFqnrRAR+ktkqlE+d++aL+++ydal+++ e+L++++++L +e++e PKA49500.1 40 EKKRRLSVEQVRALEKNFEVENKLDPERKIRIAHDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRSNYDALAADCESLRRDKAALLAEITE 132 69*************************************************************************************999976 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MRRPRARSLD SEAGGQELFG VEEEGEEDLF SGGSPGPASE KKRRLSVEQV RALEKNFEVE 60 NKLDPERKIR IAHDLGLQPR QVAVWFQNRR ARWKTKQLER DFAALRSNYD ALAADCESLR 120 RDKAALLAEI TELKSKLGEA VETTEEESES KAGASGDAPP VTKVAAPARY KDGSSDSDSS 180 AVIYDENSPY QAGIPTPPEL CRRPDELQRV VAGGCFDFQP GSEWRAERCF FPKEEQTFLT 240 GEEPCHDFFS WYSDHWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	97	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	2e-50	HD-ZIP family protein