PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA49597.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HD-ZIP

Protein Properties

Length: 284aa MW: 30648.5 Da PI: 8.604

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA49597.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.8	1.6e-17	122	176	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le+ F+++++++ +e+ LA++l+L rqV vWFqNrRa+ k PKA49597.1 122 RKKLRLSKEQSAFLEQSFKEHNTLNPKEKLALARQLNLRPRQVEVWFQNRRARTK 176 788899***********************************************98 PP
2	HD-ZIP_I/II	126.3	1.4e-40	122	212	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LE+sF+e+++L+p++K +lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++lkeen+rL+ke +eLr +lk PKA49597.1 122 RKKLRLSKEQSAFLEQSFKEHNTLNPKEKLALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLKEENRRLQKELSELR-ALK 212 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
MELALCLGDS PAKALEKIPG GSGGRQRLGL NLGIGRGREE GDGDGADPLV QLNLLPLASV 60 HRRETTPPEH PWSAEKSRNS EAYSTRGFDV NEAPAAESAE EGGAAASSSS RASDEEENGG 120 PRKKLRLSKE QSAFLEQSFK EHNTLNPKEK LALARQLNLR PRQVEVWFQN RRARTKLKQT 180 EVDCEYLKRC CETLKEENRR LQKELSELRA LKTSQPFFLQ LPATTLSMCP SCERVSSSSG 240 VVVGGVHASG SGAPAAPDKP PVPPSAAGLF PKLPFASRQP SAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	179	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	5e-69	HD-ZIP family protein