PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA49695.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 339aa MW: 36565.4 Da PI: 7.4628

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA49695.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.3	4.1e-11	149	194	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f +L ++P + kK +Ka++L A++Y+k Lq PKA49695.1 149 HILAERKRREKLSQRFITLSAVVPGL-----KKTDKASVLGDAIKYLKALQ 194 8899********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MEPQAATARW LSETELLDPS FQQWELGSLN QVMAPNIWDC LHHQNPSPRS LFSSLNPPAS 60 ITSNTRSCGS SIDSCRPKTV IPTATSSPSI LSFGNPDSPN DSSELYNNLL IGASVNPAKG 120 VKRSYDAVAA DKKAISTGFR RPAAQNHDHI LAERKRREKL SQRFITLSAV VPGLKKTDKA 180 SVLGDAIKYL KALQEKVKGL EEQAARRTVE SAVLVKKARV SVEDDENDVS SSDENFDGDG 240 DGGGGGGAEF KAAKSLPEIE VKLAEKTLLI KIHCEGRKGT LVRVLSEIEG MNLTIVSTNA 300 IPFASSSLDV TVTAQIGEEF SMAAKDVVRK LSSVFRQCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	158	ERKRRE
2	154	159	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-49	bHLH family protein