PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA49721.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family MIKC_MADS
Protein Properties Length: 273aa    MW: 31657.1 Da    PI: 9.1698
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA49721.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.41.3e-303989151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++g+l+e++s
  PKA49721.1 39 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGRLFEFCS 89
                79***********************************************96 PP
2K-box102.94.2e-341102038100
       K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 s + ++++++ +qe+ kLk+++e Lqr+qR+llGedL++Ls keL+qLe+q+e slk+iRs+K++l+l+q+ +l++ke++lqe+nkaL+kkl+e
  PKA49721.1 110 SmVPSKETQNTYQEYLKLKARVEYLQRSQRNLLGEDLGQLSTKELEQLENQVEMSLKQIRSTKTQLMLDQLCDLKRKEQMLQEANKALKKKLQE 203
                 3477899************************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MVRVREREKE RERERERERE EKEKLEKKGK MGRGRVELKR IENKINRQVT FAKRRNGLLK  60
KAYELSVLCD AEVALIIFSN RGRLFEFCSS SSMTQTLERY QTCSYNAGES MVPSKETQNT  120
YQEYLKLKAR VEYLQRSQRN LLGEDLGQLS TKELEQLENQ VEMSLKQIRS TKTQLMLDQL  180
CDLKRKEQML QEANKALKKK LQEDGPEIPL QLSWPSGSGS RGSGEHEPQS DAFFQPLTCD  240
PSLQIGYTPL CTDQRLNAGL STHNINGFIP GWM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.13e-96MIKC_MADS family protein