PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA49723.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

YABBY

Protein Properties

Length: 200aa MW: 22250.1 Da PI: 8.8144

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA49723.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	136.1	4.3e-42	1	142	1	162
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +d++ss+e++Cyv+C++Cnt+lav vP l+ +vtv+CGhC +l + + + l+a ++++++ ++ + s ss+ PKA49723.1 1 MDLVSSTEHICYVRCAYCNTVLAVGVPCRRLMDTVTVKCGHCNHLSFL--SPRPVLQAH---------------YSEHQMAFQDPCNDCRKGQFSASSS 82 57899***********************************886553..333222222...............2223333333333333333333333 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162 ++s+ e+++++p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa PKA49723.1 83 SIST---EQSSKAPYVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 142 3444...455666789*******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence
MDLVSSTEHI CYVRCAYCNT VLAVGVPCRR LMDTVTVKCG HCNHLSFLSP RPVLQAHYSE 60 HQMAFQDPCN DCRKGQFSAS SSSISTEQSS KAPYVVKPPE KKHRLPSAYN RFMREEIQRI 120 KAAKPDIPHR EAFSMAAKNW AKCDPRGSSS TTNANTDNST GTLRTLTFHH DRGNGFAVES 180 IDVFKTNGAP ELANFPTRSP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	9e-52	YABBY family protein