PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA49777.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 186aa MW: 19809.3 Da PI: 10.0876

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA49777.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F++ L H ++H PKA49777.1 66 HRCSICGKAFPSYQALGGHKSSH 88 79************999999888 PP
2	zf-C2H2	14.3	0.00012	115	137	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg++F++ L H r+H PKA49777.1 115 HQCNLCGRRFPTGQALGGHKRLH 137 79*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence
MAVLELLSFT PLSSPATNPQ PPAKRQCPFI QTPEEQLKLC LLTLASGGTT ADRRFRLAQP 60 PSPSGHRCSI CGKAFPSYQA LGGHKSSHRR PGDARSTASP ASSGGDEASI GGGGHQCNLC 120 GRRFPTGQAL GGHKRLHYWG SSSSSSAITV RGFDLNLPPD VAVEGEEEVQ SPWPEKKIRR 180 LSGRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43170.1	2e-30	C2H2 family protein