PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA49789.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family LBD
Protein Properties Length: 215aa    MW: 23289.4 Da    PI: 6.697
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA49789.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.65.3e-307108197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++Cvl+p++     p++q +++ +v+k+FG++ ++++++a+p+ +r+++++sl++eA+ r+ +Pv+Gavg++++++++l+++++e+
  PKA49789.1   7 SCNGCRVLRKGCSESCVLRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPDLHRPALFHSLLFEACGRTINPVNGAVGLLWTGNWHLCHAAVEI 105
                 6************************************************************************************************99 PP

      DUF260  95 all 97 
                 +l+
  PKA49789.1 106 VLR 108
                 876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MSASTMSCNG CRVLRKGCSE SCVLRPCLQW IESPEAQGHA TVFVAKFFGR AGLMSFISAV  60
PDLHRPALFH SLLFEACGRT INPVNGAVGL LWTGNWHLCH AAVEIVLRGG TLRPLPELSG  120
SIADSFSAEE DGDGDLYAHH QIRWYSHPNR QNDTPSGDRP LRVADLELCL NPPSAVASAK  180
EQRWPGTPSI VSEDSFTTSA GCRTGERSGL LNLFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.17e-75LBD family protein