PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA49979.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HSF

Protein Properties

Length: 352aa MW: 39878.9 Da PI: 4.7462

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA49979.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.2	3.1e-34	21	113	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k y++++d+++++++ w ++g++fv++d+++f++++LpkyFkhsn++SF+RQLn+YgF+kv++++ w Fk++ F g+k+ll++i PKA49979.1 21 FLTKCYDMVDDPATNDTVCWGDSGDTFVIKDQHTFSRDLLPKYFKHSNISSFIRQLNTYGFRKVDHDK---------WVFKNEGFVMGQKDLLKTIT 108 9***************************************************************99.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 rkks+ PKA49979.1 109 RKKSS 113 987 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MEAKRPSASG GAPLPPLLPP FLTKCYDMVD DPATNDTVCW GDSGDTFVIK DQHTFSRDLL 60 PKYFKHSNIS SFIRQLNTYG FRKVDHDKWV FKNEGFVMGQ KDLLKTITRK KSSHNIVNPP 120 PQPQGKPSTV VKAVEVGEFG LDEEIERLKR DKNLLMQELV KVRQHQQSTD KEVQELRQRL 180 QAMERNQQQM LSFLAMAVQN PSFWAQMAQQ NMSNRWRSEI NKKRRLPALE EGVMDDYDSS 240 DKQIIKYEPP VMETSGSYIA QVSNSDASNT ANGVHDLCAN VDSISIGEKS SMATDGEGVV 300 PDFADYLEML LASPIPENNG GVEQVYFDIP DFTFDFDLPQ QDVEMEKSEN TV

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MEAKRPSASG GAPLPPLLPP FLTKCYDMVD DPATNDTVCW GDSGDTFVIK DQHTFSRDLL  60
PKYFKHSNIS SFIRQLNTYG FRKVDHDKWV FKNEGFVMGQ KDLLKTITRK KSSHNIVNPP  120
PQPQGKPSTV VKAVEVGEFG LDEEIERLKR DKNLLMQELV KVRQHQQSTD KEVQELRQRL  180
QAMERNQQQM LSFLAMAVQN PSFWAQMAQQ NMSNRWRSEI NKKRRLPALE EGVMDDYDSS  240
DKQIIKYEPP VMETSGSYIA QVSNSDASNT ANGVHDLCAN VDSISIGEKS SMATDGEGVV  300
PDFADYLEML LASPIPENNG GVEQVYFDIP DFTFDFDLPQ QDVEMEKSEN TV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	8e-81	HSF family protein