PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA50013.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 26734.6 Da    PI: 10.0211
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA50013.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.46e-261059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +i n + rqvtfskRr g++KKAeEL +LCdaev +i+fs tgkl+e+ss
  PKA50013.1 10 KIHNATARQVTFSKRRRGLFKKAEELAILCDAEVGLIVFSATGKLFEFSS 59
                699*********************************************96 PP
2K-box65.12.5e-229017218100
       K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 + ++a L k++++  r++R++ GedL+ L+++eLq+Le+ Le++l+++ skK + +++qi++l+kk  +l  enk+Lr++++e
  PKA50013.1  90 NGNHAMLSKQVQEATRQLRNMRGEDLQGLNIEELQKLEKTLETGLSHVLSKKGQQIMDQINHLRKKGMQLLAENKRLRQQMAE 172
                 5567899*************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MAREKIQIRK IHNATARQVT FSKRRRGLFK KAEELAILCD AEVGLIVFSA TGKLFEFSSS  60
SLSEIIEKHK MHSKDPPKPN QPSLDLQLEN GNHAMLSKQV QEATRQLRNM RGEDLQGLNI  120
EELQKLEKTL ETGLSHVLSK KGQQIMDQIN HLRKKGMQLL AENKRLRQQM AEISKMGKQV  180
VADSDRVNYE EGQSSESVTN LTHAGPPHES HDNDYSSDTS LRLGKKILVS SLVLGRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-70MIKC_MADS family protein