PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA50151.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

FAR1

Protein Properties

Length: 1158aa MW: 131464 Da PI: 6.9729

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA50151.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.6	9.6e-09	91	121	60	90
FAR1 60 tgCkaklkvkkekdgkwevtkleleHnHela 90 Cka+++v +++dgkw ++kle+eH+H+l+ PKA50151.1 91 HRCKAMMEVVLNDDGKWTISKLETEHSHPLC 121 58***************************98 PP
2	FAR1	26.4	2.3e-08	150	198	2	48
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..t 48 fY YA+++GFs r+ ++++s + ++++fvC + ++ +++++ + PKA50151.1 150 FYYGYAEKMGFSARTGSNRRSALSAALIMQRFVCWRGSYPLQRRNSqaS 198 9***********************************9999888877331 PP
3	FAR1	74.5	2.3e-23	394	480	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA ++GF+vrk k+ r+ + r +vCskeg+r + + +++++r+etrtgC a+l +k++++g+++v+++++eHnHela PKA50151.1 394 EFYVRYAGNIGFNVRKGWWDKTARSV-TRLRVYVCSKEGFRPKGCGN--ETKKPRPETRTGCPARLAIKLTSNGRYCVSEFVSEHNHELA 480 6***************99995554.88899*****998877..99***********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1158 aa Download sequence
MVLISEISGN RREKAEANDE IEVKEETLLA MAETAPLEEE EEARNGAGPG GETLYDERAL 60 RVAQIMRSYL QMKQTAGSGS IDDHAELPAG HRCKAMMEVV LNDDGKWTIS KLETEHSHPL 120 CYGDGGDGGN RKVAIFIGMV FESVEDAKGF YYGYAEKMGF SARTGSNRRS ALSAALIMQR 180 FVCWRGSYPL QRRNSQASTG ERKRGSYRRR DLEEKKGSDG NQFDVIEVDS SVEKGGVNCG 240 ESGVEVESMP FVKNLSSSAN GRGVESHLKN GGESSTLSVS AQSKLLRELG VRVYRYSSDE 300 KRDIILRYLM KKNNRQSGER TIKFFTTQPP IGENSEQQQD NQQEQEVRRN LIGRVELQGR 360 VVARNPKQPI REVNGVVEEP TIGMVFPNEE KAFEFYVRYA GNIGFNVRKG WWDKTARSVT 420 RLRVYVCSKE GFRPKGCGNE TKKPRPETRT GCPARLAIKL TSNGRYCVSE FVSEHNHELA 480 APLDIQMFKS QKFLTKLQSG SSCRTKLIPA DYKNYLRSKH MKKMQLGDAG IMVEYLQKMK 540 GENSSFFYAI QVDEDDQLTN CFWADINSMM NYQHFGDVVC FDTTYKDADH ERPFVQFIGV 600 NHHKQTIIFG TAVLYDDSVE SLKWLFDTFN TAMSGKQPMT VLTGECSAIG DAIAAVWPGT 660 VHRYCVWHIY LSALKILSEV VQSTEAFSQD FSQCIFQFEE EEDFLTAWAC MLEKYGLKDN 720 DWMAKLYEER KKWALPYVQE LFYGDIQNTL QRESLNIVLK GYLRPELDLL QLLKKYEEFL 780 KEQRYMEQEA DYIANQVSSR AFNIRLLWKA ANVYTPAAFE MFRMEFELIP DCMVYSCGEM 840 TSVSEYEVVK DKSKVYFVRY DASDGSIFCS CKKFEFIGIQ CCHALRVLDC RNVKELSAQY 900 FLKRWRKDAK SGPVRDDQIS THNNEMQSSL STRYSSLCLI LYKLAAKAAE SNDAYAFMEG 960 QSLRILEQVE RIIHKKLLEK PPMTTASKAQ SQSQMHSESI DHESNSESRR LSGKKKDGTG 1020 RRRHQTGIEM NKRYKGHKGK SDATEVLVET TDLPVGSTEI NAHARDSSNQ FFHQSQSVQG 1080 SYIPGHQFGL GSFHSFHATP QFTHESSAPV LQQSPFPGDP HLVQAPDMHA LQFVASSSQL 1140 GPQGGDQGHY TIPVWDFL

Sequence ? help Back to Top

Protein Sequence Length: 1158 aa Download sequence

MVLISEISGN RREKAEANDE IEVKEETLLA MAETAPLEEE EEARNGAGPG GETLYDERAL  60
RVAQIMRSYL QMKQTAGSGS IDDHAELPAG HRCKAMMEVV LNDDGKWTIS KLETEHSHPL  120
CYGDGGDGGN RKVAIFIGMV FESVEDAKGF YYGYAEKMGF SARTGSNRRS ALSAALIMQR  180
FVCWRGSYPL QRRNSQASTG ERKRGSYRRR DLEEKKGSDG NQFDVIEVDS SVEKGGVNCG  240
ESGVEVESMP FVKNLSSSAN GRGVESHLKN GGESSTLSVS AQSKLLRELG VRVYRYSSDE  300
KRDIILRYLM KKNNRQSGER TIKFFTTQPP IGENSEQQQD NQQEQEVRRN LIGRVELQGR  360
VVARNPKQPI REVNGVVEEP TIGMVFPNEE KAFEFYVRYA GNIGFNVRKG WWDKTARSVT  420
RLRVYVCSKE GFRPKGCGNE TKKPRPETRT GCPARLAIKL TSNGRYCVSE FVSEHNHELA  480
APLDIQMFKS QKFLTKLQSG SSCRTKLIPA DYKNYLRSKH MKKMQLGDAG IMVEYLQKMK  540
GENSSFFYAI QVDEDDQLTN CFWADINSMM NYQHFGDVVC FDTTYKDADH ERPFVQFIGV  600
NHHKQTIIFG TAVLYDDSVE SLKWLFDTFN TAMSGKQPMT VLTGECSAIG DAIAAVWPGT  660
VHRYCVWHIY LSALKILSEV VQSTEAFSQD FSQCIFQFEE EEDFLTAWAC MLEKYGLKDN  720
DWMAKLYEER KKWALPYVQE LFYGDIQNTL QRESLNIVLK GYLRPELDLL QLLKKYEEFL  780
KEQRYMEQEA DYIANQVSSR AFNIRLLWKA ANVYTPAAFE MFRMEFELIP DCMVYSCGEM  840
TSVSEYEVVK DKSKVYFVRY DASDGSIFCS CKKFEFIGIQ CCHALRVLDC RNVKELSAQY  900
FLKRWRKDAK SGPVRDDQIS THNNEMQSSL STRYSSLCLI LYKLAAKAAE SNDAYAFMEG  960
QSLRILEQVE RIIHKKLLEK PPMTTASKAQ SQSQMHSESI DHESNSESRR LSGKKKDGTG  1020
RRRHQTGIEM NKRYKGHKGK SDATEVLVET TDLPVGSTEI NAHARDSSNQ FFHQSQSVQG  1080
SYIPGHQFGL GSFHSFHATP QFTHESSAPV LQQSPFPGDP HLVQAPDMHA LQFVASSSQL  1140
GPQGGDQGHY TIPVWDFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-105	FAR1 family protein