PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA50152.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 516aa MW: 59131.9 Da PI: 8.6242

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA50152.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.9	2.3e-08	225	257	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 WT eEd +l+ av+ +G W Ia+++ gRt PKA50152.1 225 EWTIEEDAKLKAAVETFGDS-WQIIASHLD-GRTS 257 7***************77.*****.95 PP
2	Myb_DNA-binding	56.2	7.8e-18	295	338	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rWT+eEd +l++a++++G + W+++a++++ Rt++qc+ rw +l PKA50152.1 295 RWTEEEDSKLLHAIAEHGHR-WSKVAAYVP-PRTDNQCRRRWKVLL 338 9***************99.*****.9********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
MSSKFPKSVQ NFVKALKKNR FCQRFIREKL MEIEAKIEEN NKKGSSLHLA PAENPQVSNY 60 KLVMSRYPVS LKKRLWSNME NENLAKGVKQ QYQEMLFLNS MNFGSNFEGS VDSVVMSTFS 120 GIDHQLSPEI LRAFLPLINW DRLASMYLPQ CSGPECESRW LNHEDPLINH SPWSSQEDKK 180 LLFTVQERGL YNWIDMTIAL GTHRTPFQCL ARYQRSLNPH ILNKEWTIEE DAKLKAAVET 240 FGDSWQIIAS HLDGRTSRLG HQSSFGSTGL SDRFEPIPAR LRWLNCLDPS LNLERWTEEE 300 DSKLLHAIAE HGHRWSKVAA YVPPRTDNQC RRRWKVLLPH EVPIHKAAQQ LKKAVLISNF 360 VGRERERPSI GPNDFTPLLS LPAPGDENCD RAIHGPLMNR DRPDETSLKY CGATSGGDGQ 420 ENSVNNCLAN TNAEASPSDS QLAPIQHFAT ENRHTKGKRK RIIGKHMWPR SQRRRPLDEM 480 LASDFASESS SWNTVTEPAE HAWRNDKFEQ EVGKKE

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

MSSKFPKSVQ NFVKALKKNR FCQRFIREKL MEIEAKIEEN NKKGSSLHLA PAENPQVSNY  60
KLVMSRYPVS LKKRLWSNME NENLAKGVKQ QYQEMLFLNS MNFGSNFEGS VDSVVMSTFS  120
GIDHQLSPEI LRAFLPLINW DRLASMYLPQ CSGPECESRW LNHEDPLINH SPWSSQEDKK  180
LLFTVQERGL YNWIDMTIAL GTHRTPFQCL ARYQRSLNPH ILNKEWTIEE DAKLKAAVET  240
FGDSWQIIAS HLDGRTSRLG HQSSFGSTGL SDRFEPIPAR LRWLNCLDPS LNLERWTEEE  300
DSKLLHAIAE HGHRWSKVAA YVPPRTDNQC RRRWKVLLPH EVPIHKAAQQ LKKAVLISNF  360
VGRERERPSI GPNDFTPLLS LPAPGDENCD RAIHGPLMNR DRPDETSLKY CGATSGGDGQ  420
ENSVNNCLAN TNAEASPSDS QLAPIQHFAT ENRHTKGKRK RIIGKHMWPR SQRRRPLDEM  480
LASDFASESS SWNTVTEPAE HAWRNDKFEQ EVGKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.2	1e-110	MYB family protein