PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA50223.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HD-ZIP

Protein Properties

Length: 228aa MW: 24603.8 Da PI: 6.7705

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA50223.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.5	5.3e-19	77	131	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq+ +Lee+F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k PKA50223.1 77 RKKLRLSKEQTVVLEEAFKEHSTLNPKQKMALAKQLSLRPRQVEVWFQNRRARTK 131 788899***********************************************98 PP
2	HD-ZIP_I/II	121.4	4.7e-39	77	166	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq +LEe F+e+++L+p++K++la++L l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++++l++en+rL++ev+eLr +l PKA50223.1 77 RKKLRLSKEQTVVLEEAFKEHSTLNPKQKMALAKQLSLRPRQVEVWFQNRRARTKLKQTEVECEYLKRWCEKLSDENQRLQREVAELR-AL 166 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MATGTATATA ERDELALSLS LGFPGVLATT GSSEGEEEAD QEDPAASPIS TLSSVGGAKR 60 DSDAVVGVDD EDGEGARKKL RLSKEQTVVL EEAFKEHSTL NPKQKMALAK QLSLRPRQVE 120 VWFQNRRART KLKQTEVECE YLKRWCEKLS DENQRLQREV AELRALKLLS PAISTGVKPP 180 VTLTMCPSCE RVASAAPAAS GRYHDHPFTA IAGCSVARWA AGLAPRAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	134	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	2e-63	HD-ZIP family protein