PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA50256.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family bHLH
Protein Properties Length: 286aa    MW: 31485.1 Da    PI: 4.5755
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA50256.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11120162754
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  PKA50256.1 120 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 162
                 79*********************66......****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MELDEQAFLE ELLAIRRPES AWEDTTDLFA AGDGIPAFDP FAVDPNPALF PALDCLTDAY  60
CLMLAGGGIS PFYPAAQPPE VPADAKMELP APPSLVEGAA APPAERRKRR AEGMPSKNLM  120
AERRRRKRLN DRLSMLRSVV PKISKMDRTS ILGDTIDYMK ELLEKIKRLQ EDNELGGAEQ  180
ANLLGLFKEL SSNEIMVRNS PKFDVERREG DTRIEICCAG KPGLLLSTVS TLEALGLDIQ  240
QCVVSCFNDF GMQASCSENV EQRAVLGSEE IKQALFRNAG YGGRCM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106128RRKRRAEGMPSKNLMAERRRRKR
2107129RRKRRAEGMPSKNLMAERRRRKR
3108130RRKRRAEGMPSKNLMAERRRRKR
4122129ERRRRKRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-81bHLH family protein