PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA50368.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MIKC_MADS

Protein Properties

Length: 249aa MW: 28615.9 Da PI: 9.5776

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA50368.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.8	4.3e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCd+eva+i+fs++gklyeys+ PKA50368.1 9 KRIENKINRQVTFSKRRAGLLKKAFEISVLCDIEVALIVFSTKGKLYEYST 59 79***********************************************96 PP
2	K-box	84.1	3.1e-28	87	172	13	98
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +e ++qe+ kLk+++e Lqr+q h++Ge+L+sLs keLqq+eq+Le +l+ iR +Kn+ ll+ i elq ke++l e+n L+kk+ PKA50368.1 87 LQEDMCQEYGKLKSKVEALQRSQSHMMGEKLDSLSTKELQQIEQKLEIALELIRLRKNQSLLDTITELQCKERSLIEQNSVLEKKI 172 4689********************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAFEISVLCD IEVALIVFST KGKLYEYSTD 60 SSMERILERY ERHCYAGKGL MSSQPELQED MCQEYGKLKS KVEALQRSQS HMMGEKLDSL 120 STKELQQIEQ KLEIALELIR LRKNQSLLDT ITELQCKERS LIEQNSVLEK KILQIDKARR 180 MTNQIQWEQQ TQAQPCSSPS TFLLNDTLPI LNIGQYPARI GAAQEDNSAQ PLGRRNGNGL 240 PQWMLRSPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	4e-76	MIKC_MADS family protein