PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA50401.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family M-type_MADS
Protein Properties Length: 257aa    MW: 28718.9 Da    PI: 9.6539
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA50401.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.93.5e-201965147
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                k+i+n+  rqv f+kRr+g++KKA+ELS+LC++++a++ fs+ gk +
  PKA50401.1 19 KKIKNEAARQVAFTKRRQGVIKKASELSTLCGIDIAIVAFSPAGKPF 65
                68*****************************************9855 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MDNNKKKKTS RGRQKIEIKK IKNEAARQVA FTKRRQGVIK KASELSTLCG IDIAIVAFSP  60
AGKPFSFGQP SVETIINRFL SQVDTNIVFP MVPPPTESLA IELLNLQCME IELQLKAARE  120
KKAMLEDRLR MAVEAMRDML MEKVLIGQKM EELGMEEMER IRRVLEHAKW KVETKLKDVA  180
LFPSTALQLT NTSVHADPVL PARVVNNGVV NVMGARDEFL VGYSGVLESK PLMICELVAA  240
NGEMMVYPYS ITASLIG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-25M-type_MADS family protein