PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA50408.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HD-ZIP

Protein Properties

Length: 280aa MW: 31080.5 Da PI: 9.6635

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA50408.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.5	3.9e-17	121	175	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++++++ ++++ LA +l+L rqV vWFqNrRa+ k PKA50408.1 121 RKKLRLTKEQSAFLENKFKEHSTLNPKQKQALAWQLKLRPRQVEVWFQNRRARTK 175 78889************************************************98 PP
2	HD-ZIP_I/II	112	3.9e-36	121	209	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq+++LE++F+e+++L+p++K++la +L+l+prqv+vWFqnrRARtk+k++E+++e Lkr++ al++en rL+ke +eL+ + PKA50408.1 121 RKKLRLTKEQSAFLENKFKEHSTLNPKQKQALAWQLKLRPRQVEVWFQNRRARTKLKKTEVECELLKRRFAALTDENMRLNKELQELK-D 209 69*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MMDRMKLLDG CDTTLALGLR SLHGAGETCS SRQQQVEPSL TLCHSDVETN MISRPARLSR 60 SSPHSTVNCS NYSFSAAAAV SDMIKKDQIN NKDAGVSGEA ELCRGLSRAS NEEAIDEASS 120 RKKLRLTKEQ SAFLENKFKE HSTLNPKQKQ ALAWQLKLRP RQVEVWFQNR RARTKLKKTE 180 VECELLKRRF AALTDENMRL NKELQELKDL KFSPAPAPLP LFIQLPAATL VICPSCERIA 240 GAAGSLESEA SSTVRRRPFL IAANSPKNFF SPFSSHSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	126	SRKKLRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	6e-57	HD-ZIP family protein