PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA50468.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family bHLH
Protein Properties Length: 249aa    MW: 27381.9 Da    PI: 7.7346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA50468.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.9e-13190235655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri +++ +L+el+P+     +k  s a++L +Av+YIk+Lq
  PKA50468.1 190 SIAERVRRTRISERMRKLQELVPNM----DKQASTADMLDLAVDYIKDLQ 235
                 689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MSSGLLRYSS APSCLIGELC EGFFPARPSS PEAELMFTRL LDPDRRDEIG RNSQFTPCVP  60
AAVAEDPSGG FSSSSRMFYR SQRLGTGGVS GGGGGITEDS SVARCFVPAY SVSSWDDSSF  120
LSENFSPCRS TGGLNRNGEI TNQPVSGVTH HFNLPKTSSE MVALEKFFQF QDSVPCKIRA  180
KRGCATHPRS IAERVRRTRI SERMRKLQEL VPNMDKQAST ADMLDLAVDY IKDLQKQVEV  240
GKNFDFLII
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-50bHLH family protein