PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA50478.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 345aa MW: 39486.3 Da PI: 6.3212

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA50478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	183	202	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp+C k+F+r n++ H+ PKA50478.1 183 FSCPICFKTFNRYNNMQMHM 202 89*****************9 PP
2	zf-C2H2	15	7e-05	267	289	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F + + ++H +++ PKA50478.1 267 FMCQKCGKAFAVRGDWRTHEKNC 289 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MGDPYANFFK GYFDHHTFSF NSSFPAVDPP PPPMAAPKPI VYHSHFITNF DHQSPPSSPP 60 LKEALPLLRQ HAEEEEEDQQ NNMKKKKGLL LIHEEEEEED EDREDIESVT VALHIGLPSP 120 SRLDLVSRVS SNYQEEQKEE DDAEEAELAE LPLGQHATPI GNLNKGQYWI PTPSQILIGP 180 TQFSCPICFK TFNRYNNMQM HMWGHGSQYR KGPESLRGIQ PTAMLRLPCY CCSLGCRNNV 240 DHPRSKPLKD FRTLQTHYKR KHGIKPFMCQ KCGKAFAVRG DWRTHEKNCG KLWYCICGSD 300 FKHKRSLKDH VKAFGDGHAA YGMNCFDEDD EPLSEIEQDN GGEQR

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MGDPYANFFK GYFDHHTFSF NSSFPAVDPP PPPMAAPKPI VYHSHFITNF DHQSPPSSPP  60
LKEALPLLRQ HAEEEEEDQQ NNMKKKKGLL LIHEEEEEED EDREDIESVT VALHIGLPSP  120
SRLDLVSRVS SNYQEEQKEE DDAEEAELAE LPLGQHATPI GNLNKGQYWI PTPSQILIGP  180
TQFSCPICFK TFNRYNNMQM HMWGHGSQYR KGPESLRGIQ PTAMLRLPCY CCSLGCRNNV  240
DHPRSKPLKD FRTLQTHYKR KHGIKPFMCQ KCGKAFAVRG DWRTHEKNCG KLWYCICGSD  300
FKHKRSLKDH VKAFGDGHAA YGMNCFDEDD EPLSEIEQDN GGEQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-127	C2H2 family protein