PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA50511.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

CO-like

Protein Properties

Length: 429aa MW: 47402.8 Da PI: 5.5238

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA50511.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.7	1.8e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++e++ +C+++ lC +C + H+ H++ PKA50511.1 4 LCDFCGEQRPMVYCRSDAASLCLSCDRNVHSAnalsqrHSR 44 7*****************************65677777765 PP
2	zf-B_box	22	3.4e-07	46	90	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 C+++ ++++ C +++ lC++C ++H g H+++++ PKA50511.1 46 LLCDRCYSEPAMVRCIEDCISLCQNCDWNDH-GtsssasgHKRETI 90 57*****************************.55888899998765 PP
3	CCT	63.4	7.1e-22	372	415	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+k R+FeKkirY+sRKa+A+sR RvKGrFvk+ PKA50511.1 372 RDNAVMRYKEKKKIRRFEKKIRYASRKARADSRRRVKGRFVKAG 415 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MVSLCDFCGE QRPMVYCRSD AASLCLSCDR NVHSANALSQ RHSRTLLCDR CYSEPAMVRC 60 IEDCISLCQN CDWNDHGTSS SASGHKRETI NCYSGCPSAT ELARIWSFSL EYPPLSDSSC 120 EKGMGLMSIN ENSASSYWGP PENSSNVNVA ERCRMIDSEN VNKNVHIGSS TSTANPMSDD 180 SGMKDNGITK NGFYDNFGVD DVDLTFEHYE ELFGASHAHS EQIFDDAGID SFFEMKEISA 240 ASSNCQSEAV DEAESALKLL ILVSAGKRGE NSRGMDLRMT ELRLLDVKFK QAAYSTVVSA 300 DSLTSNRGEK ADSSMSIPAR QARSSLSLSF SGLTGESSAG DYQDSEMSSI LLMGEPPWYP 360 CGPDGSIQAA NRDNAVMRYK EKKKIRRFEK KIRYASRKAR ADSRRRVKGR FVKAGEAYDY 420 DPLCRNKSF

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MVSLCDFCGE QRPMVYCRSD AASLCLSCDR NVHSANALSQ RHSRTLLCDR CYSEPAMVRC  60
IEDCISLCQN CDWNDHGTSS SASGHKRETI NCYSGCPSAT ELARIWSFSL EYPPLSDSSC  120
EKGMGLMSIN ENSASSYWGP PENSSNVNVA ERCRMIDSEN VNKNVHIGSS TSTANPMSDD  180
SGMKDNGITK NGFYDNFGVD DVDLTFEHYE ELFGASHAHS EQIFDDAGID SFFEMKEISA  240
ASSNCQSEAV DEAESALKLL ILVSAGKRGE NSRGMDLRMT ELRLLDVKFK QAAYSTVVSA  300
DSLTSNRGEK ADSSMSIPAR QARSSLSLSF SGLTGESSAG DYQDSEMSSI LLMGEPPWYP  360
CGPDGSIQAA NRDNAVMRYK EKKKIRRFEK KIRYASRKAR ADSRRRVKGR FVKAGEAYDY  420
DPLCRNKSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	5e-82	CO-like family protein