PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA50579.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

WRKY

Protein Properties

Length: 502aa MW: 55135.4 Da PI: 7.7624

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA50579.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.5	2.7e-33	192	249	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k PKA50579.1 192 DDGYNWRKYGQKQVKGSENPRSYYKCTYPSCPTKKKVERSL-DGQITEIIYKGTHNHQK 249 8**************************************.*************85 PP
2	WRKY	105.5	2.9e-33	348	406	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d ++v++tYeg+Hnhe PKA50579.1 348 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTSGCTVRKHVERASNDLRAVITTYEGKHNHE 406 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MASSTASFGT SANSLQAGFS FPVASSSSTF LDVRDAAGDE RSPLGAGSHV FAADPAATGL 60 AKFKSTPPSL FPLSPSPISP SSFLAFPGGL SPAELLNSPM LFSSTAMLTP PTTGSFSTQG 120 FNWRGNTTSS GSFSFQSSTH PSSVLLMPSE EEGYKGHRDP WSYKQPAHIS SSELPAFHAP 180 TQTSLKESRR IDDGYNWRKY GQKQVKGSEN PRSYYKCTYP SCPTKKKVER SLDGQITEII 240 YKGTHNHQKP QRTRRNNSSS SSSFHGLAQS EGQEQLGALL MDSNATPENS SASFGDEELD 300 LSSQGFGEEP DAKRWRMDGE NEENSSFGNR AVREPKVVVQ TTSDIDILDD GYRWRKYGQK 360 VVKGNPNPRS YYKCTTSGCT VRKHVERASN DLRAVITTYE GKHNHEVPAP RVGSSTMNRS 420 SVEGSSNQFS AVNHHHSQMA SHDSFFATKN YGFESNMAFS RSYDQNSMGS LLSDQQKQVD 480 FRSSKTKEEP RDDHLFIESW LS

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MASSTASFGT SANSLQAGFS FPVASSSSTF LDVRDAAGDE RSPLGAGSHV FAADPAATGL  60
AKFKSTPPSL FPLSPSPISP SSFLAFPGGL SPAELLNSPM LFSSTAMLTP PTTGSFSTQG  120
FNWRGNTTSS GSFSFQSSTH PSSVLLMPSE EEGYKGHRDP WSYKQPAHIS SSELPAFHAP  180
TQTSLKESRR IDDGYNWRKY GQKQVKGSEN PRSYYKCTYP SCPTKKKVER SLDGQITEII  240
YKGTHNHQKP QRTRRNNSSS SSSFHGLAQS EGQEQLGALL MDSNATPENS SASFGDEELD  300
LSSQGFGEEP DAKRWRMDGE NEENSSFGNR AVREPKVVVQ TTSDIDILDD GYRWRKYGQK  360
VVKGNPNPRS YYKCTTSGCT VRKHVERASN DLRAVITTYE GKHNHEVPAP RVGSSTMNRS  420
SVEGSSNQFS AVNHHHSQMA SHDSFFATKN YGFESNMAFS RSYDQNSMGS LLSDQQKQVD  480
FRSSKTKEEP RDDHLFIESW LS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-97	WRKY family protein