PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA50583.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family ERF
Protein Properties Length: 227aa    MW: 25793.7 Da    PI: 5.1105
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA50583.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.5e-2083132155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++y+GVr++  +g+WvAeIr+p     +  r +lg+++ta eAa+a+++a+ +++g
  PKA50583.1  83 CHYRGVRQRT-WGKWVAEIREP-----NrSRLWLGTYDTAVEAAAAYDEAAAAMYG 132
                 79*****999.**********8.....44***********************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MEPELEGRRR RIYYTVQATE DDERKRRTST RRRGISVAEI IAKWKDHNEK LQSNDSQITP  60
KFPGKGSRKG CMRGKGGPEN SYCHYRGVRQ RTWGKWVAEI REPNRSRLWL GTYDTAVEAA  120
AAYDEAAAAM YGACARLNFP ESELRKPSAG EKMNVKSDEL KEEPLDLEER EPDQLDVGEI  180
TGDADLHDPN GGRIAWSLEQ MDQIGYFSDL DYGLLDLGSP DGSLFFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1827RRRRIYYTVQATEDDERKRR
2928RRRRIYYTVQATEDDERKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.11e-29ERF family protein