PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA50654.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

TALE

Protein Properties

Length: 314aa MW: 34554.2 Da PI: 6.171

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA50654.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.3	1.5e-09	237	271	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ PKA50654.1 237 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 271 569*****************************885 PP
2	ELK	36.3	1.2e-12	191	212	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlr YsgyLgsLkqEF+ PKA50654.1 191 ELKGQLLRRYSGYLGSLKQEFL 212 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
MEGWSGGNPN GGGGLSPLMI MPATGSNPIF FPPPPAAAAA GVDFDASVIK AKIMSHPYYP 60 RLLSAYVNCH KVGAPPEVVA RLEEACAASM ISSNTGGNGS AAAGGEDPAL DQFMEAYCEM 120 LTKYEQELSK PFKEAMIFLS RIDAQFKSLS LSHPSPPHPP QVCGEYDKNG SSEEDVDLCD 180 NFIDPQAEER ELKGQLLRRY SGYLGSLKQE FLKKRKKGKL PKEARQQLLD WWTRHYKWPY 240 PSESQKLALA ESTGLDQKQI NNWFINQRKR HWKPSEEMQF VVMDAANPHY FLDAGGVGGL 300 AGNPFALDCT PALL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	216	LKQEFLKKRK
2	213	217	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-111	TALE family protein