PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA50785.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 581aa MW: 66231.3 Da PI: 9.1486

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA50785.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.2	0.0007	437	454	37	54
-STCHHHHHHHHHHHHHH CS HLH 37 KlsKaeiLekAveYIksL 54 ls a iLekA+++Ik++ PKA50785.1 437 ILSRAGILEKACKHIKEM 454 599*************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence
MKSRRMNSKM MRKLWSTSSS LQSRHRSFQP LSIPSRLFSR YNMEIGRLSR SGDITAARRL 60 FDRMPSRDVV SWNVMITAHW QNNDLPESKK LFRSMPERNV VSWNTMIAGC LNDGLIDEAF 120 KCYFLEMPER NVASWNAMIS GFVKSDRVSE AEKLFVEMPN RNVISYTAMV DGFARNGKID 180 RARELFDGMP QRNLVSWAAM ISGYVENGRF EEAKFLFDRM PEKNAIATTA MITGNYKEGK 240 IDAARSLFDG MSFKDTVSWN TMIAGYLHNG YSEEALKLQT EMMKEGIKPD HATFVTALTA 300 CSTITALHRG RQCHAACIKF SLEFDILLCN ALMNMYSRCG SIDDAESIFE TMRSRDLISW 360 NTIIAAFAHH GLYHKVSNLL HKMECNGFIP NGVSFLSLLS ACRHSGKVDE SLNWFNLMVS 420 KYRITPRTEH YACLVDILSR AGILEKACKH IKEMTFDAEE ESSYIWAALL GACQMKKNLR 480 VGELAAEKLL QLDPKSSGTY IMLSNLYAEA GLWEEVTKVR DKMKDNRVKK EPGYSWTEIS 540 GKVHFFLVGD SSHKETVRIR SALSSIYLHM RKSPSKEISS F

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence

MKSRRMNSKM MRKLWSTSSS LQSRHRSFQP LSIPSRLFSR YNMEIGRLSR SGDITAARRL  60
FDRMPSRDVV SWNVMITAHW QNNDLPESKK LFRSMPERNV VSWNTMIAGC LNDGLIDEAF  120
KCYFLEMPER NVASWNAMIS GFVKSDRVSE AEKLFVEMPN RNVISYTAMV DGFARNGKID  180
RARELFDGMP QRNLVSWAAM ISGYVENGRF EEAKFLFDRM PEKNAIATTA MITGNYKEGK  240
IDAARSLFDG MSFKDTVSWN TMIAGYLHNG YSEEALKLQT EMMKEGIKPD HATFVTALTA  300
CSTITALHRG RQCHAACIKF SLEFDILLCN ALMNMYSRCG SIDDAESIFE TMRSRDLISW  360
NTIIAAFAHH GLYHKVSNLL HKMECNGFIP NGVSFLSLLS ACRHSGKVDE SLNWFNLMVS  420
KYRITPRTEH YACLVDILSR AGILEKACKH IKEMTFDAEE ESSYIWAALL GACQMKKNLR  480
VGELAAEKLL QLDPKSSGTY IMLSNLYAEA GLWEEVTKVR DKMKDNRVKK EPGYSWTEIS  540
GKVHFFLVGD SSHKETVRIR SALSSIYLHM RKSPSKEISS F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64100.2	7e-32	NAC family protein