PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA50913.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family LBD
Protein Properties Length: 230aa    MW: 24040.4 Da    PI: 9.1454
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA50913.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.97e-38481501101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                 +C aCk+lrrkCa++Cv+a +f +eq  +++fa+vhk+FGasnv+kllk++p+ +r+da++++ yeA+ar++dPv G+v+++l+lq+q++ql+ael+ +
  PKA50913.1  48 PCGACKFLRRKCASGCVFAAHFGNEQsaAARFAAVHKVFGASNVSKLLKKVPPARRHDAVATVSYEAQARLSDPVLGCVATVLALQHQVMQLQAELSIV 146
                 7*********************88874469********************************************************************9 PP

      DUF260  98 keel 101
                 +++l
  PKA50913.1 147 QSQL 150
                 9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MPPSNIACRN DPSAGGKKGN TADSNTTPPR LAGAAATAGR GSTVTGAPCG ACKFLRRKCA  60
SGCVFAAHFG NEQSAAARFA AVHKVFGASN VSKLLKKVPP ARRHDAVATV SYEAQARLSD  120
PVLGCVATVL ALQHQVMQLQ AELSIVQSQL INSRLAAAGA MRYSAMPQQG LMVVRPPAPA  180
FSNSSESINN MNSKIFSLSS LEYLCDARGL ELLQLPQTAG DDGEGVEWKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.15e-59LBD family protein