PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA50997.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HB-other

Protein Properties

Length: 1000aa MW: 109717 Da PI: 8.6084

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA50997.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	15.2	3.6e-05	73	128	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++R ++++ ++ ++++F+ + ++ ++e +e+++ +g+t +qV+ + +R + + PKA50997.1 73 KKPRDLLNPKAIKYMQSVFAIKDTIGKKETREISALCGITVTQVRDFLSGQRSRVR 128 799*****************************************977666666665 PP

Sequence ? help Back to Top
Protein Sequence Length: 1000 aa Download sequence
MALVPASTVS SLMELDVDGS VESLSRLLDA QKELFHGQID QLQRLVVTQC KLTGVNPLSQ 60 EMAAGALSIK IGKKPRDLLN PKAIKYMQSV FAIKDTIGKK ETREISALCG ITVTQVRDFL 120 SGQRSRVRKF ARLAREKAVR TDRTDTVNIA NEGNPTCPDT TLLVANENPN SAVDTGSTGE 180 CAEIPACSGH LPSIQDQNIP GRAIDPKPAE VVAPLSSTQE ETMPGIDAED KTFLESIFSL 240 MRKEEAFSGQ VKLMEWILQI HNSAVLIWFL TKGGITILAA WLDQAAIEEQ TTVLRVILKV 300 LCHLPLHKAL PAQMSAVLQT VNKLRFYRTP DISNRARVLL SRWSKMLVRS QSLKNPSTIN 360 SINGEHKEMI MKQRIREILS DEFWQSKVGI PEDILALTEN TENDRKLEPK QTLKLLTASC 420 DGSNRKHVQS VSSIKTKERR KVLLVEQLDD KSAGRAQAGK AAALNHSRPI SADDIQKAKM 480 RAMFMQHKYG KAAASSSVNG ELPAGETNKI MPLSTTLQRD HEKSHNDNKT IEAPTNKRFL 540 EASREEQLLK RLKMNKIKWQ LPPEMATNSS WRVGEGESSK ELQVQAQRIN REKETRYPSP 600 ADIPPNPKEP WDVEMDFDDS LTPEIPIEQQ PDVDLPEDSP DPPPVHEDPS PETTTTATSA 660 PPASPAPLAS VTSSGSAAAP DLELLAVLLK NPDLVFALTS GHGKNLTGDE MVALLDKLKQ 720 SGGAPAISVN GTSGVSREME RRSREPEPEP TSLPSPTPPS DAARATGWRS AFPAMLKAPL 780 PLSVPHKAPT LPPQPQQAVL PIPPAAATAG AAATAAVAAA PRNPPANSLV THQGLLAPPL 840 PPQHSFSPSY PIQHKHGAES LHLPVQYASF SAAMASPRAA TVSTSDSASF LELSYPESYS 900 ERPPAAEFLL QGHRDQRYDD LYALGEEEIS VRSRPSRSWS PGGTPVRSPQ LRHGHGRSYG 960 EGRREHGWSQ QQDWSRQRGN YRSGGSDSRR WRDRDRDRRR

Sequence ? help Back to Top

Protein Sequence Length: 1000 aa Download sequence

MALVPASTVS SLMELDVDGS VESLSRLLDA QKELFHGQID QLQRLVVTQC KLTGVNPLSQ  60
EMAAGALSIK IGKKPRDLLN PKAIKYMQSV FAIKDTIGKK ETREISALCG ITVTQVRDFL  120
SGQRSRVRKF ARLAREKAVR TDRTDTVNIA NEGNPTCPDT TLLVANENPN SAVDTGSTGE  180
CAEIPACSGH LPSIQDQNIP GRAIDPKPAE VVAPLSSTQE ETMPGIDAED KTFLESIFSL  240
MRKEEAFSGQ VKLMEWILQI HNSAVLIWFL TKGGITILAA WLDQAAIEEQ TTVLRVILKV  300
LCHLPLHKAL PAQMSAVLQT VNKLRFYRTP DISNRARVLL SRWSKMLVRS QSLKNPSTIN  360
SINGEHKEMI MKQRIREILS DEFWQSKVGI PEDILALTEN TENDRKLEPK QTLKLLTASC  420
DGSNRKHVQS VSSIKTKERR KVLLVEQLDD KSAGRAQAGK AAALNHSRPI SADDIQKAKM  480
RAMFMQHKYG KAAASSSVNG ELPAGETNKI MPLSTTLQRD HEKSHNDNKT IEAPTNKRFL  540
EASREEQLLK RLKMNKIKWQ LPPEMATNSS WRVGEGESSK ELQVQAQRIN REKETRYPSP  600
ADIPPNPKEP WDVEMDFDDS LTPEIPIEQQ PDVDLPEDSP DPPPVHEDPS PETTTTATSA  660
PPASPAPLAS VTSSGSAAAP DLELLAVLLK NPDLVFALTS GHGKNLTGDE MVALLDKLKQ  720
SGGAPAISVN GTSGVSREME RRSREPEPEP TSLPSPTPPS DAARATGWRS AFPAMLKAPL  780
PLSVPHKAPT LPPQPQQAVL PIPPAAATAG AAATAAVAAA PRNPPANSLV THQGLLAPPL  840
PPQHSFSPSY PIQHKHGAES LHLPVQYASF SAAMASPRAA TVSTSDSASF LELSYPESYS  900
ERPPAAEFLL QGHRDQRYDD LYALGEEEIS VRSRPSRSWS PGGTPVRSPQ LRHGHGRSYG  960
EGRREHGWSQ QQDWSRQRGN YRSGGSDSRR WRDRDRDRRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	990	1000	RWRDRDRDRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-143	HB-other family protein