PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA51000.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C3H

Protein Properties

Length: 510aa MW: 54674.6 Da PI: 8.3687

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA51000.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.2	1e-11	49	75	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtGtC yG+rC+++H++ PKA51000.1 49 PGEPDCAYYMRTGTCGYGERCRYNHPR 75 5789*********************96 PP
2	zf-CCCH	40.5	4.4e-13	98	122	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCk+G++CkF+H++ PKA51000.1 98 QPVCEYYMKTGTCKFGSSCKFHHPK 122 689********************96 PP
3	zf-CCCH	40.3	5.1e-13	142	167	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++rtG+Ck+G++CkF H++ PKA51000.1 142 GEKECSYYMRTGQCKFGSTCKFDHPQ 167 7899********************97 PP
4	zf-CCCH	37.7	3.5e-12	302	325	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++++rtG Ck+G++Ck++H+p PKA51000.1 302 LECQYYMRTGDCKFGATCKYHHPP 325 58********************97 PP
5	zf-CCCH	26	1.6e-08	349	371	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C ++a+ Ck+G++CkF H++ PKA51000.1 349 VCAYYAQHAACKFGPTCKFDHPM 371 7********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MDPYGRSSTV DGSRPDTDTG LEESMWRLGI GGGSGGGGGG RDFPYPERPG EPDCAYYMRT 60 GTCGYGERCR YNHPRDRGGV VGGAVWPGTV QYPERIGQPV CEYYMKTGTC KFGSSCKFHH 120 PKHGGLVQPV SLNYFGYPLR PGEKECSYYM RTGQCKFGST CKFDHPQHAS ASAPSTAPLF 180 YPSVQPPSTP SSQQYSQISG WQIGKPSSSL SGAYMPGPYG PVVISSGVVP VPGWSPYMRF 240 IMMPIVKQPP LGQNVSPGSQ QSAKTVTSVP THTGSYLSIS SSIGPSSSSR TECFFPVRPG 300 QLECQYYMRT GDCKFGATCK YHHPPDWSLP KTNCILSPLG LPLRPGAQVC AYYAQHAACK 360 FGPTCKFDHP MGSLTYSPSA SSLVDMPVAP YPIGISPPTL APSSSSTELR PDLLSNKDPF 420 SSQKPSPKES SSGYVSPLLT KGLFLPDSFI ESASHVAVSS SSSSSTKGHT GETSAQDGSL 480 IINHLSDFSS KLMKLNRVLQ VLGPSEDVLY

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MDPYGRSSTV DGSRPDTDTG LEESMWRLGI GGGSGGGGGG RDFPYPERPG EPDCAYYMRT  60
GTCGYGERCR YNHPRDRGGV VGGAVWPGTV QYPERIGQPV CEYYMKTGTC KFGSSCKFHH  120
PKHGGLVQPV SLNYFGYPLR PGEKECSYYM RTGQCKFGST CKFDHPQHAS ASAPSTAPLF  180
YPSVQPPSTP SSQQYSQISG WQIGKPSSSL SGAYMPGPYG PVVISSGVVP VPGWSPYMRF  240
IMMPIVKQPP LGQNVSPGSQ QSAKTVTSVP THTGSYLSIS SSIGPSSSSR TECFFPVRPG  300
QLECQYYMRT GDCKFGATCK YHHPPDWSLP KTNCILSPLG LPLRPGAQVC AYYAQHAACK  360
FGPTCKFDHP MGSLTYSPSA SSLVDMPVAP YPIGISPPTL APSSSSTELR PDLLSNKDPF  420
SSQKPSPKES SSGYVSPLLT KGLFLPDSFI ESASHVAVSS SSSSSTKGHT GETSAQDGSL  480
IINHLSDFSS KLMKLNRVLQ VLGPSEDVLY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-114	C3H family protein