PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA51017.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MIKC_MADS

Protein Properties

Length: 234aa MW: 27001.8 Da PI: 8.2991

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA51017.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.9	1.5e-29	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien++ rqvtfskRrng+lKKA+ELSvLCdaev +i+fs++gklye++s PKA51017.1 10 RIENSTSRQVTFSKRRNGLLKKAFELSVLCDAEVGLIVFSPRGKLYEFAS 59 8***********************************************86 PP
2	K-box	78.3	2e-26	87	172	13	98
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + e+++ +++ L k++e L+ ++R+l+GedLes+s++eL++Le+qLe+sl+kiR +Kn ll eq+eel++kek l een L+k++ PKA51017.1 87 NLEQWKLDAEALAKKTEVLEISKRKLMGEDLESCSVEELRKLEDQLEQSLSKIRRRKNSLLSEQVEELKEKEKILLEENSLLQKQY 172 7899*******************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MVRGKTEMRR IENSTSRQVT FSKRRNGLLK KAFELSVLCD AEVGLIVFSP RGKLYEFASS 60 SMQKTIERYK QRAKDMCGNG RATDPLNLEQ WKLDAEALAK KTEVLEISKR KLMGEDLESC 120 SVEELRKLED QLEQSLSKIR RRKNSLLSEQ VEELKEKEKI LLEENSLLQK QYSRLLSSAS 180 CKEAVIPQEE NEHSKEVETE LYIGWPERGR NQQLMNSKGE ESVIDSDVQT RGKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22950.1	9e-62	MIKC_MADS family protein