PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA51375.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

LBD

Protein Properties

Length: 165aa MW: 18690.3 Da PI: 8.1239

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA51375.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118.4	4.1e-37	17	117	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+l+++C++dC+ apyfp++qp +f ++hk+FGasnv ++lk+lp + r +a++s+v eA +r++dPvyGa+++i+ lqqq++++++e+ ++++ PKA51375.1 17 RCAACKHLKKRCTEDCAWAPYFPHSQPYRFSCAHKIFGASNVERMLKKLPAHLRAQAADSIVSEAYWRVQDPVYGATAIITYLQQQIQKAHNEILQAQA 115 6********************************************************************************************999988 PP DUF260 100 el 101 ++ PKA51375.1 116 QI 117 75 PP

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence
MSRCNIFIES AINGGRRCAA CKHLKKRCTE DCAWAPYFPH SQPYRFSCAH KIFGASNVER 60 MLKKLPAHLR AQAADSIVSE AYWRVQDPVY GATAIITYLQ QQIQKAHNEI LQAQAQIAIY 120 KAQEELLNQL ARPNIDEARY ASEDSSLLLP DMTNLPPDFF FLNGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	3e-35	LBD family protein