PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA51382.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HD-ZIP

Protein Properties

Length: 194aa MW: 21971 Da PI: 8.2164

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA51382.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.8	1.8e-18	83	137	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t++q +Le+ F+ ++ +s e+ eLA++lgL rqV vWFqNrRa+ k PKA51382.1 83 RKKLRLTRDQSYVLEDTFRAHNILSSPEKHELAANLGLRPRQVEVWFQNRRARTK 137 78889************************************************98 PP
2	HD-ZIP_I/II	114.3	7.5e-37	83	170	1	88
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+++q+ +LE++F++++ L++ +K+ela +Lgl+prqv+vWFqnrRARtk+kq+E d+e+Lk+++ +l++en+rL+++ ++Lr PKA51382.1 83 RKKLRLTRDQSYVLEDTFRAHNILSSPEKHELAANLGLRPRQVEVWFQNRRARTKLKQTEIDCEFLKKWCGSLSDENKRLTRQLHDLR 170 69**********************************************************************************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MGEDLCDTRL GLGIGGGSLG VDVKPAVRLQ LWFPPAAKEV EVEVEEEEEE DNVAPMGSSD 60 SEKPEKKKNK KKKGDGDDGG GQRKKLRLTR DQSYVLEDTF RAHNILSSPE KHELAANLGL 120 RPRQVEVWFQ NRRARTKLKQ TEIDCEFLKK WCGSLSDENK RLTRQLHDLR FHAEVSKIEA 180 IKICSSCQGL KEKK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	140	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	8e-35	HD-ZIP family protein