PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA51434.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

SBP

Protein Properties

Length: 459aa MW: 49842.5 Da PI: 8.1837

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA51434.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.3	6.8e-41	169	245	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dl ak+yhr+hkvCe hsk+p+v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+ PKA51434.1 169 CQVEGCNIDLIAAKDYHRKHKVCESHSKSPNVIVAGKERRFCQQCSRFHDLSEFDQKKRSCRRRLSDHNARRRKPQP 245 **************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MEWNLKTPLQ WDCENPALFS AKESELSKIS LQVEWGAENG GVISYGSTYS SCSGTCSGSD 60 LGSGSSRSSI SASVGSLSKV KIKASEALEV LHEKLGKGED SGTSPVVVGN KTAGEPAIGL 120 KLGKRTYFED FSAANVKASS SLVSIAPPSS CSSFKKPRVS NKAIESSYCQ VEGCNIDLIA 180 AKDYHRKHKV CESHSKSPNV IVAGKERRFC QQCSRFHDLS EFDQKKRSCR RRLSDHNARR 240 RKPQPQTVAF NSSGFSSSFY DGRQHMNFFP NQAPFSNARS SSGLLLEESS GFSLSTTKGS 300 WLKQPTAKLV DGQMHLPGAS LCNAVPSSHL DLERLIPCKG AMTNAQSQGL EASVSAFSVN 360 RALDLQRALS LLSNNSCRSS STGQVDTIQH TASHPPVEAA YSTPECWQDD HSLFQQEPAF 420 NFHGNGSQFH DYHKTPCESS FFEASQVFSK SDGHFFSLV

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MEWNLKTPLQ WDCENPALFS AKESELSKIS LQVEWGAENG GVISYGSTYS SCSGTCSGSD  60
LGSGSSRSSI SASVGSLSKV KIKASEALEV LHEKLGKGED SGTSPVVVGN KTAGEPAIGL  120
KLGKRTYFED FSAANVKASS SLVSIAPPSS CSSFKKPRVS NKAIESSYCQ VEGCNIDLIA  180
AKDYHRKHKV CESHSKSPNV IVAGKERRFC QQCSRFHDLS EFDQKKRSCR RRLSDHNARR  240
RKPQPQTVAF NSSGFSSSFY DGRQHMNFFP NQAPFSNARS SSGLLLEESS GFSLSTTKGS  300
WLKQPTAKLV DGQMHLPGAS LCNAVPSSHL DLERLIPCKG AMTNAQSQGL EASVSAFSVN  360
RALDLQRALS LLSNNSCRSS STGQVDTIQH TASHPPVEAA YSTPECWQDD HSLFQQEPAF  420
NFHGNGSQFH DYHKTPCESS FFEASQVFSK SDGHFFSLV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	242	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	3e-55	SBP family protein