PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA51484.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

E2F/DP

Protein Properties

Length: 380aa MW: 42249.6 Da PI: 9.0085

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA51484.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	73.2	2.8e-23	16	81	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++f++l+++++ ++v l+++a +L v +rRRiYDi+NV+e+++++++k+kn++ w+g PKA51484.1 16 RKQKSLGLLCSNFVALYNREDVETVGLDDAAVKL---GV--ERRRIYDIVNVMESVGVLTRKAKNRYLWIG 81 79**************9999********.....****************************98 PP
2	E2F_TDP	79	4.4e-25	148	228	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL++ltq+f+kll +s++++v+l+e+a+ L+ + ++++k+RR+YDi+NVL++lnliek ++k+++rw g PKA51484.1 148 RKEKSLGQLTQNFVKLLLTSNAETVSLDEAARLLLGDgqdpsHMRTKVRRLYDIANVLSSLNLIEKtyqceTRKPAFRWLG 228 79*****************************************************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MAEKGESSGR HYSYSRKQKS LGLLCSNFVA LYNREDVETV GLDDAAVKLG VERRRIYDIV 60 NVMESVGVLT RKAKNRYLWI GFKGIPAALE QLKEEALKEL NGLSSEPSAA RASDDEDGDK 120 SLDQNEDDGE GRSCANDIAA KSRTVLDRKE KSLGQLTQNF VKLLLTSNAE TVSLDEAARL 180 LLGDGQDPSH MRTKVRRLYD IANVLSSLNL IEKTYQCETR KPAFRWLGTK GKHDTSVTVA 240 LPPAAQQLGK RMFGTELTNL DIKRSRTVPS VDKKPFKTEL PNAVLKECNL AAQRQLQGSK 300 PFVFGPFSPN PPNEEASQKK IKEAQDFESF ASSLSPTYHS QALHDLFTHY MDAYNSWFAQ 360 IAGSSNIQPS SKKSFPSRHS

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MAEKGESSGR HYSYSRKQKS LGLLCSNFVA LYNREDVETV GLDDAAVKLG VERRRIYDIV  60
NVMESVGVLT RKAKNRYLWI GFKGIPAALE QLKEEALKEL NGLSSEPSAA RASDDEDGDK  120
SLDQNEDDGE GRSCANDIAA KSRTVLDRKE KSLGQLTQNF VKLLLTSNAE TVSLDEAARL  180
LLGDGQDPSH MRTKVRRLYD IANVLSSLNL IEKTYQCETR KPAFRWLGTK GKHDTSVTVA  240
LPPAAQQLGK RMFGTELTNL DIKRSRTVPS VDKKPFKTEL PNAVLKECNL AAQRQLQGSK  300
PFVFGPFSPN PPNEEASQKK IKEAQDFESF ASSLSPTYHS QALHDLFTHY MDAYNSWFAQ  360
IAGSSNIQPS SKKSFPSRHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	2e-93	E2F/DP family protein