PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA51710.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family ARF
Protein Properties Length: 512aa    MW: 56326.9 Da    PI: 8.1115
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA51710.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.5e-23111212199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f kvltpsd+++ g +++p+ +a+++         ++ +   + + d +g +We+++iyr++++r++lt+GW++F ++++L +gD+vvF   +++ ++l
  PKA51710.1 111 FAKVLTPSDANNGGGFSVPRFCADSIfpkldykADPPVQ--NILVLDVHGSTWEFRHIYRGTPRRHLLTTGWSKFINSKKLVAGDSVVFI--RNHAGQL 205
                 89*********************999****996555555..6999*********************************************..5588999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+v+r+
  PKA51710.1 206 FVGVRRT 212
                 ****985 PP
2Auxin_resp77.24.1e-26252330182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                 a++aa+++ +Fev+Y+Pr++++eFvv  e+ve+a+ v++  GmR+kma+et++s+++++  Gtv++    d v W +S Wr L
  PKA51710.1 252 AVRAAEMGRPFEVIYYPRVGWPEFVVAKERVEAAMAVPWGSGMRIKMAVETDESPRTTWfHGTVSS----DAVPWARSLWRTL 330
                 68899******************************************************9999986....4567*******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    
MASSRSGRPM DYSVWKACAG GSARVPPVGA AVYYFPEGHA EHAASAPKFS TLRRHPFFHC  60
RVTAVSLLAH HESEEVFARI SLDPRASNAA ADPALSPTPL DDEGGSGVVH FAKVLTPSDA  120
NNGGGFSVPR FCADSIFPKL DYKADPPVQN ILVLDVHGST WEFRHIYRGT PRRHLLTTGW  180
SKFINSKKLV AGDSVVFIRN HAGQLFVGVR RTCRTYGDGP IDLQFSPEIK LKHAGVQRIM  240
KERLPPESVA EAVRAAEMGR PFEVIYYPRV GWPEFVVAKE RVEAAMAVPW GSGMRIKMAV  300
ETDESPRTTW FHGTVSSDAV PWARSLWRTL TVNWDEPEVL HNLKTVSPWQ VEVVQASSAY  360
PVLKRPKLSE EFEISKEEHG SFIFPLTGFC STEMGSLTSS VFDLNGSPSG RQGARHFLDF  420
APSSTGEVFA NIANMNGILK SRNLVISKSE ALSPAACSPP RKSRNGSIQL FGQIIQIEQL  480
ADSNVSTEFS LWFPHNQLLD NQIRLSAVGA CE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-123ARF family protein