PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA51716.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 394aa MW: 43948.7 Da PI: 6.8927

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA51716.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.2	1.6e-06	181	202	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H PKA51716.1 181 FCLICGKGFKRDANLRMHMRGH 202 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MDLKLKGCAE SSSSSQILSE LARNLSPEMP FSQLSSTKPD KSESAPFTNN KFPDWDPRLM 60 LNNLSFLEQK IHQVQDLVHS INNQDYQVSN ELAAQKQLVT ADLTSIIIQL ISTAGSLLPC 120 IKSFNESSQQ EIFPLVESSK AAELDELTNT SDHEDVDNLL PGSYEVLQLE KEEILAPHTH 180 FCLICGKGFK RDANLRMHMR GHGDEYKSPA ALAKPLKDTD SEPNLIKRYS CPFVGCKRNK 240 EHKKFQPLKT ILCVKNHYKR SHCDKSYTCS RCKIKKFSVL ADLKTHEKHC GREKWLCSCG 300 TSFSRKDKLF GHVALFQGHT PSLPIDEGKA SRELGHGDGG EAKADVGDLV FSDVDERGLF 360 SLMNFDCYNF DASETPYCFP SSGSSGYVPG NGRA

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MDLKLKGCAE SSSSSQILSE LARNLSPEMP FSQLSSTKPD KSESAPFTNN KFPDWDPRLM  60
LNNLSFLEQK IHQVQDLVHS INNQDYQVSN ELAAQKQLVT ADLTSIIIQL ISTAGSLLPC  120
IKSFNESSQQ EIFPLVESSK AAELDELTNT SDHEDVDNLL PGSYEVLQLE KEEILAPHTH  180
FCLICGKGFK RDANLRMHMR GHGDEYKSPA ALAKPLKDTD SEPNLIKRYS CPFVGCKRNK  240
EHKKFQPLKT ILCVKNHYKR SHCDKSYTCS RCKIKKFSVL ADLKTHEKHC GREKWLCSCG  300
TSFSRKDKLF GHVALFQGHT PSLPIDEGKA SRELGHGDGG EAKADVGDLV FSDVDERGLF  360
SLMNFDCYNF DASETPYCFP SSGSSGYVPG NGRA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-143	C2H2 family protein