PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA51952.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 315aa MW: 36800.6 Da PI: 10.1617

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA51952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.3	4.3e-14	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW eEd l +vkq+G++ W++++++m+ + R +k+c +rw +yl PKA51952.1 4 RQRWRVEEDAVLRAYVKQYGPREWNLVSQRMNvpLQRDAKSCLERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	36.7	9.8e-12	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + PKA51952.1 59 KGSLTEEEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 6788****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence
MKERQRWRVE EDAVLRAYVK QYGPREWNLV SQRMNVPLQR DAKSCLERWK NYLKPGIKKG 60 SLTEEEQRLV IRLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE LKEISRASSA 120 PIEPGKYDRI LESFAEKLVK ERQIASPLIM AAATPLLPPW LACSDKPSSN PSVALTLSSP 180 TLPAQLLGLV GSQQNDMNRG DLFSEIVGCC REVEEGYQAW MAHKKEAAWR LRRVELQLEA 240 ERSCKRREKI EEIEMKLRAL KEEETMALER IEAEYREQIL GLRRDAEMKE QKQGEMWSAK 300 HGRLRKLLEK MSCRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	1e-121	MYB family protein