PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52041.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 518aa MW: 56685.4 Da PI: 6.4434

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52041.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.8	3.8e-13	372	418	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr+++P+ + K++Ka+ L A+ YI +Lq PKA52041.1 372 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAIAYITELQ 418 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MKMEMGNGVV GGGFWSDDDL AMAIAVLGPQ AFEYLTKSHV SSDGLFTAVG GGDVDLQKKL 60 VDLVEASGAG WSFAIFWQIS QSKSGDVVLG WGDGHLREPR EAEPDLEANA GELQQKMRKR 120 VLQKLHVLHG GSDDENYALR LDRVTDAEMF FLASMYFAFP RGDGAPGRVL LSRKHLWVTD 180 SGMCSSYCVR SFLARAAGFR TIVLVPFETG VLELGSVNLI PESFEALQRI RSFFIDGNAP 240 ILHLECPKIF GKDLNIGRSE LSTPKLEGRP VDICLRSNGL AGNRKALNWS QARRFSAQQP 300 AVGPSPPPPR QIDFSGGVNS GVGALVGRIG AFESENSDAE ASCKEERASI IDERKPRKRG 360 RKPANGREEP LNHVEAERQR REKLNQRFYA LRSVVPNISK MDKASLLGDA IAYITELQRK 420 LKEVESEKDP PPENKVSNVE IQASDEEVIV RVSCPLDGHP VSGVLRAFKE SNINVIESQM 480 SVMSDTLLHT FIVKSPAGGE LATKEKVAAA ISREISSD

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MKMEMGNGVV GGGFWSDDDL AMAIAVLGPQ AFEYLTKSHV SSDGLFTAVG GGDVDLQKKL  60
VDLVEASGAG WSFAIFWQIS QSKSGDVVLG WGDGHLREPR EAEPDLEANA GELQQKMRKR  120
VLQKLHVLHG GSDDENYALR LDRVTDAEMF FLASMYFAFP RGDGAPGRVL LSRKHLWVTD  180
SGMCSSYCVR SFLARAAGFR TIVLVPFETG VLELGSVNLI PESFEALQRI RSFFIDGNAP  240
ILHLECPKIF GKDLNIGRSE LSTPKLEGRP VDICLRSNGL AGNRKALNWS QARRFSAQQP  300
AVGPSPPPPR QIDFSGGVNS GVGALVGRIG AFESENSDAE ASCKEERASI IDERKPRKRG  360
RKPANGREEP LNHVEAERQR REKLNQRFYA LRSVVPNISK MDKASLLGDA IAYITELQRK  420
LKEVESEKDP PPENKVSNVE IQASDEEVIV RVSCPLDGHP VSGVLRAFKE SNINVIESQM  480
SVMSDTLLHT FIVKSPAGGE LATKEKVAAA ISREISSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	354	362	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46510.1	1e-137	bHLH family protein