PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52065.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 257aa MW: 29192.9 Da PI: 7.5612

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52065.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.6	1.9e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++ Edell +++ +G g+W++ +++ g+ R+ k+c++rw +yl PKA52065.1 14 KGQWSPAEDELLTSYIRTHGEGNWTSLPKKAGLLRCKKSCRLRWVNYL 61 799***************************99**********97 PP
2	Myb_DNA-binding	53.5	5.5e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++E++l+++++++lG++ W++Ia++++ gRt++++k++w+++l PKA52065.1 67 RGNITAQEEDLIIRLHALLGNR-WSLIASRLP-GRTDNEIKNYWNTHL 112 7999****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MGRSPCWSKE GIVKGQWSPA EDELLTSYIR THGEGNWTSL PKKAGLLRCK KSCRLRWVNY 60 LKPDIKRGNI TAQEEDLIIR LHALLGNRWS LIASRLPGRT DNEIKNYWNT HLVKKLKTHG 120 FVFPARPSAV RRGPPPGRRS RSGEGSPAKI YVPKPMRFRP RLPESSGSCS IDHQETISTS 180 ASTPSSTPCH ADEVVDDVLK LVDPNLHCVM GFDFDLDLDS SDFQNWEDDA VLDRVYEEYS 240 QLLRSEEDEA LHPFESH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16720.1	3e-59	MYB family protein